Pubblicazioni Scientifiche

Filtri di ricerca 16 risultati
Reset
Pubblicazioni per anno
Benchmarking tree species classification from proximally sensed laser scanning data: Introducing the FOR-species20K dataset
Puliti , Stefano , Lines , Emily R. , Müllerová , Jana , Frey , Julian , Schindler , Zoe , Straker , Adrian , Allen , Matthew J. , Winiwarter , Lukas , Rehush , Nataliia , Hristova , Hristina S. , Murray , Brent A. , Calders , Kim , Coops , Nicholas C. , Höfle , Bernhard , Irwin , Liam A.K. , Junttila , Samuli , Kruček , Martin , Krok , G. , Král , Kamil , Levick , Shaun R. , Lück , Linda , Missarov , Azim , Mokroš , M. , Owen , Harry Jon Foord , Stereńczak , Krzysztof Jan , Pitkänen , Timo P. , Puletti , Nicola , Saarinen , Ninni , Hopkinson , Chris Dennis , Terryn , Louise , Torresan , C. , Tomelleri , Enrico , Weiser , Hannah , Astrup , Rasmus
lidar remote sensing biodiversity deep learning point cloud classification single-tree inventory
Mostra abstract
Proximally sensed laser scanning presents new opportunities for automated forest ecosystem data capture. However, a gap remains in deriving ecologically pertinent information, such as tree species, without additional ground data. Artificial intelligence approaches, particularly deep learning (DL), have shown promise towards automation. Progress has been limited by the lack of large, diverse, and, most importantly, openly available labelled single-tree point cloud datasets. This has hindered both (1) the robustness of the DL models across varying data types (platforms and sensors) and (2) the ability to effectively track progress, thereby slowing the convergence towards best practice for species classification. To address the above limitations, we compiled the FOR-species20K benchmark dataset, consisting of individual tree point clouds captured using proximally sensed laser scanning data from terrestrial (TLS), mobile (MLS) and drone laser scanning (ULS). Compiled collaboratively, the dataset includes data collected in forests mainly across Europe, covering Mediterranean, temperate and boreal biogeographic regions. It includes scattered tree data from other continents, totaling over 20,000 trees of 33 species and covering a wide range of tree sizes and forms. Alongside the release of FOR-species20K, we benchmarked seven leading DL models for individual tree species classification, including both point cloud (PointNet++, MinkNet, MLP-Mixer, DGCNNs) and multi-view 2D-based methods (SimpleView, DetailView, YOLOv5). 2D Image-based models had, on average, higher overall accuracy (0.77) than 3D point cloud-based models (0.72). Notably, the performance was consistently >0.8 across scanning platforms and sensors, offering versatility in deployment. The top-scoring model, DetailView, demonstrated robustness to training data imbalances and effectively generalized across tree sizes. The FOR-species20K dataset represents an important asset for developing and benchmarking DL models for individual tree species classification using proximally sensed laser scanning data. As such, it serves as a crucial foundation for future efforts to classify accurately and map tree species at various scales using laser scanning technology, as it provides the complete code base, dataset, and an initial baseline representative of the current state-of-the-art of point cloud tree species classification methods. © 2025 The Author(s). Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
🔗 Vai alla pubblicazione
2025
Rivista
Methods in Ecology and Evolution
Dettagli
Vol. 16 (4) pp. 801 - 818
DOI
Plant functional traits are correlated with species persistence in the herb layer of old-growth beech forests
Campetella , Giandiego , Chelli , Stefano , Simonetti , Enrico , Damiani , Claudia , Bartha , Sándor , Wellstein , Camilla , Giorgini , Daniele , Puletti , Nicola , Mucina , Ladislav , Cervellini , Marco , Canullo , R.
beech forest genetics plant leaf plant seed quantitative trait fagus forests plant leaves heritable seeds
Mostra abstract
This paper explores which traits are correlated with fine-scale (0.25 m<sup>2</sup>) species persistence patterns in the herb layer of old-growth forests. Four old-growth beech forests representing different climatic contexts (presence or absence of summer drought period) were selected along a north–south gradient in Italy. Eight surveys were conducted in each of the sites during the period spanning 1999–2011. We found that fine-scale species persistence was correlated with different sets of plant functional traits, depending on local ecological context. Seed mass was found to be as important for the fine-scale species persistence in the northern sites, while clonal and bud-bank traits were markedly correlated with the southern sites characterised by summer drought. Leaf traits appeared to correlate with species persistence in the drier and wetter sites. However, we found that different attributes, i.e. helomorphic vs scleromorphic leaves, were correlated to species persistence in the northernmost and southernmost sites, respectively. These differences appear to be dependent on local trait adaptation rather than plant phylogenetic history. Our findings suggest that the persistent species in the old-growth forests might adopt an acquisitive resource-use strategy (i.e. helomorphic leaves with high SLA) with higher seed mass in sites without summer drought, while under water-stressed conditions persistent species have a conservative resource-use strategy (i.e. scleromorphic leaves with low SLA) with an increased importance of clonal and resprouting ability. © 2020, The Author(s).
🔗 Vai alla pubblicazione
2020
Rivista
Scientific Reports
Dettagli
Vol. 10 (1)
DOI
Checking the performance of point and plot sampling on aerial photoimagery of a large-scale population of trees outside forests
Fattorini , Lorenzo , Puletti , Nicola , Chirici , Gherardo , Corona , P. , Gazzarri , C. , Mura , Matteo , Marchetti , Marco
tessellation stratified sampling two-phase sampling design-based estimation one-per-stratum stratified sampling
Mostra abstract
The present study investigates some sampling strategies for the estimation of abundance and canopy cover of trees outside forest (TOF) over large areas. A collection of about 53 000 TOF units in Central Italy was acquired by visual, on-screen interpretation of aerial orthophotos and was taken as the reference population with the purpose of investigating: (i) one-phase inventories with sample points located by means of the tessellation stratified sampling (TSS), which involves covering the study region by a grid of regular polygons of equal sizes and randomly and independently selecting a point in each of them; (ii) two-phase inventories with the one-per-stratum stratified sampling adopted in the second phase to select a sample of polygons from the grid and then visit only the points contained in those polygons. Uniform random sampling is also considered in the first phase as a benchmark for tessellation stratified sampling. The sampling schemes adopted to select TOF units at the sample points are as follows: (i) point sampling, (ii) centroid-based plot sampling with plot radius of 50m(CPLS50) or 100 m, and (iii) plot intersect sampling with plot radius of 50 or 100 m. CPLS50 under single-phase TSS proves to be a promising strategy to large-scale TOF inventories. © 2016, Canadian Science Publishing. All rights reserved.
🔗 Vai alla pubblicazione
2016
Rivista
Canadian Journal of Forest Research
Dettagli
Vol. 46 (11) pp. 1264 - 1274
DOI
Prediction of forest NPP in Italy by the combination of ground and remote sensing data
Chirici , Gherardo , Chiesi , Marta , Corona , P. , Puletti , Nicola , Mura , Matteo , Maselli , Fabio
italy forest inventory biome-bgc current annual increment modified c-fix regional estimates
Mostra abstract
Our research group has recently proposed a strategy to simulate net forest carbon fluxes based on the coupling of a NDVI-driven parametric model, Modified C-Fix, and of a biogeochemical model, BIOME-BGC. The outputs of the two models are combined through the use of a proxy of ecosystem distance from equilibrium condition which accounts for the occurred disturbances. This modeling strategy is currently applied to all Italian forest areas using an available set of NDVI images and ancillary data descriptive of an 8-year period (1999–2006). The obtained estimates of forest net primary production (NPP) are first analyzed in order to assess the importance of the main model drivers on relevant spatial variability. This analysis indicates that growing stock is the most influential model driver, followed by forest type and meteorological variables. In particular, the positive influence of growing stock on NPP can be constrained by thermal and water limitations, which are most evident in the upper mountain and most southern zones, respectively. Next, the NPP estimates, aggregated over seven main forest types and twenty administrative regions in Italy, are converted into current annual increment of standing volume (CAI) by specific coefficients. The accuracy of these CAI estimates is finally assessed by comparison with the ground data collected during a recent national forest inventory. The results obtained indicate that the modeling approach tends to overestimate the ground CAI for most forest types. In particular, the overestimation is notable for forest types which are mostly managed as coppice, while it is negligible for high forests. The possible origins of these phenomena are investigated by examining the main model drivers together with the results of previous studies and of older forest inventories. The implications of using different NPP estimation methods are finally discussed in view of assessing the forest carbon budget on a national basis. © 2015, Springer-Verlag Berlin Heidelberg.
🔗 Vai alla pubblicazione
2015
Rivista
European Journal of Forest Research
Dettagli
Vol. 134 (3) pp. 453 - 467
DOI
Continental Contrasts in Climate Extremes That Control Tree Fecundity
Clark , James S. , Andrus , Robert A. , Arianoutsou , Margarita , Ascoli , Davide , Bergeron , Yves , Bogdziewicz , Michał , Boivin , Thomas , Bonal , Raúl , Caignard , Thomas , Cailleret , Maxime , Calama , Rafael A. , Camarero , Jesús Julio , Chianucci , Francesco , Cienciala , Emil , Courbaud , Benoít , Delzon , Sylvain , Dietze , Michael C. , Espelta , Josep Maria , Fady , Bruno , Fyllas , Nikolaos M. , Gilbert , Gregory S. , Gratzer , Georg , Guignabert , Arthur , Hacket-Pain , Andrew J. , Hampe , Arndt , Hanley , Mick E. , Hille Ris Lambers , Janneke , Holik , Jan , Hoshizaki , K. , Hu , Miao , Ibáñez , Inés , Işık , Fatih , Jenkins , Lauren , Johnstone , Jill F. , Journé , Valentin , Kadioglu , Alper Kaan , Kızılaslan , İrem Sena , Knops , Johannes Michael Hubertus , Kobe , Richard K. , Köse , Nesibe , Külah , Eylül U. , Kunstler , Georges , LaMontagne , Jalene M. , Ledwoń , Mateusz , Lehtonen , Aleksi , Loewe-Muñoz , Verónica F. , Lutz , James A. , Mårell , Anders , Meyer , Kira , Moran , Emily V. , Motta , Renzo , Myers , Jonathan A. , Nagel , Thomas A. , Pérez-Ramos , Ignacio M. , Piechnik , Łukasz , Podgórski , Tomasz , Poulton-Kamakura , Renata , Qiu , Tong , Redmond , Miranda D. , Reid , Chantal D. , Rodman , Kyle C. , Rodríguez-Sánchez , Francisco , Šamonil , Pavel , Šebeň , Vladimír , Seget , Barbara , Sharma , Shubhi , Socha , Jarosław Ł. , Steele , Michael A. , Straub , Jacob N. , Sutton , Samantha , Thomas , Peter A. , Vacchiano , Giorgio , Venner , Marie Claude , Venner , Samuel , Zavala , Miguel A. , Zheng , Shiqi , Żywiec , Magdalena
drought climate extremes forest recovery late freeze
Mostra abstract
In 2023, more than half of olive harvests (Olea europaea) across Spain, Greece, and Türkiye were lost to drought. The same year late freeze destroyed 90% of the peach crop (Prunus persica) on the Georgia Piedmont and the apple crop (Malus domestica) in central New York, Vermont, and southern Quebec. Climate extremes now rank with the costliest threats to agriculture, but their role in forest recovery from diebacks that are happening globally is unknown for lack of tree fecundity estimates in forests. Tolerance of climate extremes could depend on past exposure but constrained by phylogenetic conservatism. We report a continental scale analysis of climate extremes and forest fecundity across North America and Europe showing that responses to late freeze and drought are happening now. Species differences are not explained by the traits typically included in ecological studies and they are weakly associated with phylogeny. Late freeze, that is, freezing temperatures that follow the onset of flower development in spring, is shown to be “normal” in North America, but not Europe, potentially explaining failed seed production due to delayed onset and the resultant shorter growing period by North American transplants dating back at least to the 18th century. Drought has thus far had the greatest impacts in dry forested regions, but here too, species differences are not explained by traditional trait values. If responses have been buffered from drought and late freeze by past exposure, acclimation and local adaptation prove inadequate as extremes intensify. © 2026 John Wiley & Sons Ltd.
🔗 Vai alla pubblicazione
2026
Rivista
Global Change Biology
Dettagli
Vol. 32 (2)
DOI
Towards an effective in-situ biodiversity assessment in European forests
Burrascano , Sabina , Chojnacki , Lucas , Balducci , Lorenzo , Chianucci , Francesco , Haeler , Elena , Kepfer-Rojas , Sebastian , Paillet , Yoan , de Andrade , Rafael Barreto , Boch , Steffen , de Smedt , Pallieter , Fischer , Markus , Mijangos , Itziar Garcia , Heilmann-Clausen , Jacob , Hofmeister , Jeňýk , Hošek , Jan , Kozák , Daniel , Kutszegi , Gergely , Lachat , Thibault , Mikoláš , Martin , Samu , Ferenc , Ravera , Sonia , Schall , Peter , Sitzia , Tommaso , Svoboda , Miroslav , Trentanovi , Giovanni , Ujházyová , Mariana , Vandekerkhove , Kris , Tinya , Flóra , Ódor , Péter
forest biodiversity vascular plants birds epiphytic bryophytes epiphytic lichens monitoring network multivariate standard error rarefaction curves saproxylic beetles wood-inhabiting fungi
Mostra abstract
Assessing multi-taxon biodiversity is crucial to understand forests’ response to environmental changes and to inform management strategies. In Europe, forest biodiversity monitoring is still scattered and heterogeneous, although a long-term monitoring network has long been advocated. Given the monitoring aims reported in various EU policies, this network should be accurately designed also through the estimation of its sampling effort, here intended as the number of sampling plots and sites. We used a novel database of forest multi-taxon biodiversity for a pilot study to: estimate the minimum sampling effort needed to: assess variation in species richness and composition; compare these estimates with the efforts invested in the pilot database; discuss estimates’ differences across taxonomic groups and forest categories. We focused on six taxonomic groups (vascular plants, birds, epiphytic lichens and bryophytes, wood-inhabiting fungi and saproxylic beetles) across six forest categories. Based on 6,165 plots at 2,084 different locations across Europe, we benchmarked the effort to achieve: a complete species richness estimate through interpolation/extrapolation curves, and a precise evaluation of species composition variation through multivariate standard error. Our estimates differed widely, especially among taxonomic groups. For species richness, estimates range from 3 to 147 plots per site across 3 to 29 sites per forest category, with birds and epiphytic bryophytes requiring the least effort. For species composition, estimates range from 5 to over 25 plots per site across 5 to 20 sites per forest category, with saproxylic beetles, vascular plants, and fungi displaying the highest estimates. The taxonomic groups requiring an effort comparable to existing data were the least diverse, all the others need greater efforts, either for species richness (e.g., saproxylic beetles), or species composition (e.g., vascular plants), or both (e.g., wood-inhabiting fungi). An effective monitoring network of European forests’ biodiversity should thoroughly account for these benchmarks and for their taxon-dependency. © 2025
🔗 Vai alla pubblicazione
2025
Rivista
Basic and Applied Ecology
Dettagli
Vol. 84 pp. 121 - 132
DOI
Silvicultural regime shapes understory functional structure in European forests
Chianucci , Francesco , Napoleone , Francesca , Ricotta , Carlo , Ferrara , Carlotta , Fusaro , Lina , Balducci , Lorenzo , Trentanovi , Giovanni , Bradley , Owen , Kovács , Bence , Mina , Marco , Cerabolini , Bruno Enrico Leone , Vandekerkhove , Kris , de Smedt , Pallieter , Lens , Luc , Hertzog , Lionel R. , Verheyen , Kris , Hofmeister , Jeňýk , Hošek , Jan , Matula , Radim , Doerfler , Inken , Müller , Jörg C. C. , Weisser , Wolfgang W. , Helback , Jan , Schall , Peter , Fischer , Markus , Heilmann-Clausen , Jacob , Riis-Hansen , Rasmus , Goldberg , Irina , Aude , Erik , Kepfer-Rojas , Sebastian , Kappel Schmidt , Inger , Riis-Nielsen , Torben , Mårell , Anders , Dumas , Yann , Janssen , Philippe , Paillet , Yoan , Archaux , Frédéric , Xystrakis , Fotios , Tinya , Flóra , Ódor , Péter , Aszalós , Réka , Bölöni , János , Cutini , Andrea , Bagella , Simonetta , Sitzia , Tommaso , Brazaitis , Gediminas , Marozas , Vitas , Ujházyová , Mariana , Ujházy , Karol , Máliš , František , Nordén , Björn , Burrascano , Sabina
functional diversity functional redundancy forest understory sustainable forest management unmanaged forests ecosystem resilience silvicultural regime
Mostra abstract
Managing forests to sustain their diversity and functioning is a major challenge in a changing world. Despite the key role of understory vegetation in driving forest biodiversity, regeneration and functioning, few studies address the functional dimensions of understory vegetation response to silvicultural management. We assessed the influence of the silvicultural regimes on the functional diversity and redundancy of European forest understory. We gathered vascular plant abundance data from more than 2000 plots in European forests, each associated with one out of the five most widespread silvicultural regimes. We used generalized linear mixed models to assess the effect of different silvicultural regimes on understory functional diversity (Rao's quadratic entropy) and functional redundancy, while accounting for climate and soil conditions, and explored the reciprocal relationship between three diversity components (functional diversity, redundancy and dominance) across silvicultural regimes through a ternary diversity diagram. Intensive silvicultural regimes are associated with a decrease in functional diversity and an increase in functional redundancy, compared with unmanaged conditions. This means that although intensive management may buffer communities' functions against species or functional losses, it also limits the range of understory response to environmental changes. Policy implications. Different silvicultural regimes influence different facets of understory functional features. While unmanaged forests can be used as a reference to design silvicultural practices in compliance with biodiversity conservation targets, different silvicultural options should be balanced at landscape scale to sustain the multiple forest functions that human societies are increasingly demanding. © 2024 The Author(s). Journal of Applied Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.
🔗 Vai alla pubblicazione
2024
Rivista
Journal of Applied Ecology
Dettagli
Vol. 61 (10) pp. 2350 - 2364
DOI
Evolutionary ecology of masting: mechanisms, models, and climate change
Bogdziewicz , Michał , Kelly , Dave J. , Ascoli , Davide , Caignard , Thomas , Chianucci , Francesco , Crone , Elizabeth E. , Fleurot , Emilie , Foest , Jessie J. , Gratzer , Georg , Hagiwara , Tomika , Han , Qingmin , Journé , Valentin , Keurinck , Léa , Kondrat , Katarzyna , McClory , Ryan W. , LaMontagne , Jalene M. , Mundo , Ignacio A. , Nussbaumer , Anita , Oberklammer , Iris , Ohno , Misuzu , Pearse , Ian S. , Pesendorfer , Mario B. , Resente , Giulia , Satake , Akiko , Shibata , Mitsue , Snell , Rebecca S. , Szymkowiak , Jakub , Touzot , Laura , Zwolak , Rafał , Żywiec , Magdalena , Hacket-Pain , Andrew J.
climate change economies of scale environmental prediction plant demography plant reproduction
Mostra abstract
Many perennial plants show mast seeding, characterized by synchronous and highly variable reproduction across years. We propose a general model of masting, integrating proximate factors (environmental variation, weather cues, and resource budgets) with ultimate drivers (predator satiation and pollination efficiency). This general model shows how the relationships between masting and weather shape the diverse responses of species to climate warming, ranging from no change to lower interannual variation or reproductive failure. The role of environmental prediction as a masting driver is being reassessed; future studies need to estimate prediction accuracy and the benefits acquired. Since reproduction is central to plant adaptation to climate change, understanding how masting adapts to shifting environmental conditions is now a central question. © 2024 The Authors
🔗 Vai alla pubblicazione
2024
Rivista
Trends in Ecology and Evolution
Dettagli
Vol. 39 (9) pp. 851 - 862
DOI
Widespread breakdown in masting in European beech due to rising summer temperatures
Foest , Jessie J. , Bogdziewicz , Michał , Pesendorfer , Mario B. , Ascoli , Davide , Cutini , Andrea , Nussbaumer , Anita , Verstraeten , Arne , Beudert , Burkhard , Chianucci , Francesco , Mezzavilla , Francesco , Gratzer , Georg , Kunstler , Georges , Meesenburg , H. , Wagner , Markus , Mund , Martina , Cools , Nathalie , Vacek , Stanislav , Schmidt , Wolfgang , Vacek , Zdeněk Ck , Hacket-Pain , Andrew J.
climate change fagus sylvatica seed production fecundity masting reproduction
Mostra abstract
Climate change effects on tree reproduction are poorly understood, even though the resilience of populations relies on sufficient regeneration to balance increasing rates of mortality. Forest-forming tree species often mast, i.e. reproduce through synchronised year-to-year variation in seed production, which improves pollination and reduces seed predation. Recent observations in European beech show, however, that current climate change can dampen interannual variation and synchrony of seed production and that this masting breakdown drastically reduces the viability of seed crops. Importantly, it is unclear under which conditions masting breakdown occurs and how widespread breakdown is in this pan-European species. Here, we analysed 50 long-term datasets of population-level seed production, sampled across the distribution of European beech, and identified increasing summer temperatures as the general driver of masting breakdown. Specifically, increases in site-specific mean maximum temperatures during June and July were observed across most of the species range, while the interannual variability of population-level seed production (CVp) decreased. The declines in CVp were greatest, where temperatures increased most rapidly. Additionally, the occurrence of crop failures and low seed years has decreased during the last four decades, signalling altered starvation effects of masting on seed predators. Notably, CVp did not vary among sites according to site mean summer temperature. Instead, masting breakdown occurs in response to warming local temperatures (i.e. increasing relative temperatures), such that the risk is not restricted to populations growing in warm average conditions. As lowered CVp can reduce viable seed production despite the overall increase in seed count, our results warn that a covert mechanism is underway that may hinder the regeneration potential of European beech under climate change, with great potential to alter forest functioning and community dynamics. © 2024 The Authors. Global Change Biology published by John Wiley & Sons Ltd.
🔗 Vai alla pubblicazione
2024
Rivista
Global Change Biology
Dettagli
Vol. 30 (5)
DOI
Where are we now with European forest multi-taxon biodiversity and where can we head to?
Burrascano , Sabina , Chianucci , Francesco , Trentanovi , Giovanni , Kepfer-Rojas , Sebastian , Sitzia , Tommaso , Tinya , Flóra , Doerfler , Inken , Paillet , Yoan , Nagel , Thomas A. , Mitić , Božena , Morillas , Lourdes , Munzi , Silvana , Van Der Sluis , Theo , Alterio , Edoardo , Balducci , Lorenzo , de Andrade , Rafael Barreto , Bouget , Christophe , Giordani , P. , Lachat , Thibault , Matošević , Dinka , Napoleone , Francesca , Nascimbene , Juri , Paniccia , Chiara , Roth , Nicolas , Aszalós , Réka , Brazaitis , Gediminas , Cutini , Andrea , D'Andrea , Ettore , de Smedt , Pallieter , Heilmann-Clausen , Jacob , Janssen , Philippe , Kozák , Daniel , Mårell , Anders , Mikoláš , Martin , Nordén , Björn , Matula , Radim , Schall , Peter , Svoboda , Miroslav , Ujházyová , Mariana , Vandekerkhove , Kris , Wohlwend , Michael Rudolf , Xystrakis , Fotios , Aleffi , Michele , Ammer , Christian , Archaux , Frédéric , Asbeck , Thomas , N Avtzis , Dimitrios N. , Ayasse , Manfred , Bagella , Simonetta , Balestrieri , Rosario , Barbati , Anna , Basile , Marco , Bergamini , Ariel , Bertini , Giada , Biscaccianti , Alessandro Bruno , Boch , Steffen , Bölöni , János , Bombi , Pierluigi , Boscardin , Yves , Brunialti , Giorgio , Bruun , Hans Henrik , Buscot , François , Byriel , David Bille , Campagnaro , Thomas , Campanaro , Alessandro , Chauvat , Matthieu , Ciach , Michał , Čiliak , Marek , Cistrone , Luca , Pereira , Joaò Manuel Cordeiro , Daniel , Rolf , de Cinti , Bruno , de Filippo , Gabriele , Dekoninck , Wouter , Di Salvatore , Umberto , Dumas , Yann , Elek , Zoltán , Ferretti , Fabrizio , Fotakis , Dimitrios G. , Frank , Tamás , Frey , Julian , Giancola , Carmen , Gömöryová , Erika , Gosselin , Marion , Gosselin , Frédéric , Goßner , Martin M. , Götmark , Frank , Haeler , Elena , Hansen , Aslak Kappel , Hertzog , Lionel R. , Hofmeister , Jeňýk , Hošek , Jan , Johannsen , Vivian Kvist , Justensen , Mathias Just , Korboulewsky , Nathalie , Kovács , Bence , Lakatos , Ferenc , Landivar , Carlos Miguel , Lens , Luc , Lingua , Emanuele
forest biodiversity biodiversity conservation forest stand structure multi-taxon sustainable management
Mostra abstract
The European biodiversity and forest strategies rely on forest sustainable management (SFM) to conserve forest biodiversity. However, current sustainability assessments hardly account for direct biodiversity indicators. We focused on forest multi-taxon biodiversity to: i) gather and map the existing information; ii) identify knowledge and research gaps; iii) discuss its research potential. We established a research network to fit data on species, standing trees, lying deadwood and sampling unit description from 34 local datasets across 3591 sampling units. A total of 8724 species were represented, with the share of common and rare species varying across taxonomic classes: some included many species with several rare ones (e.g., Insecta); others (e.g., Bryopsida) were represented by few common species. Tree-related structural attributes were sampled in a subset of sampling units (2889; 2356; 2309 and 1388 respectively for diameter, height, deadwood and microhabitats). Overall, multi-taxon studies are biased towards mature forests and may underrepresent the species related to other developmental phases. European forest compositional categories were all represented, but beech forests were over-represented as compared to thermophilous and boreal forests. Most sampling units (94%) were referred to a habitat type of conservation concern. Existing information may support European conservation and SFM strategies in: (i) methodological harmonization and coordinated monitoring; (ii) definition and testing of SFM indicators and thresholds; (iii) data-driven assessment of the effects of environmental and management drivers on multi-taxon forest biological and functional diversity, (iv) multi-scale forest monitoring integrating in-situ and remotely sensed information. © 2023 The Authors
🔗 Vai alla pubblicazione
2023
Rivista
Biological Conservation
Dettagli
Vol. 284
DOI
Review of ground and aerial methods for vegetation cover fraction (fCover) and related quantities estimation: definitions, advances, challenges, and future perspectives
Li , Linyuan , Mu , Xihan , Jiang , Hailan , Chianucci , Francesco , Hu , Ronghai , Song , Wanjuan , Qi , Jianbo , Liu , Shouyang , Zhou , Jiaxin , Chen , Ling , Huang , Huaguo , Yan , Guangjian
airborne remote sensing fcover ground measurements image and lidar unmanned aerial vehicle (uav) “cover” attribute
Mostra abstract
Vegetation cover fraction (fCover) and related quantities are basic yet critical vegetation structure variables in various disciplines and applications. Ground- and aerial-based proximal and remote sensing techniques have been widely adapted across multiple spatial extents. However, the definitions of fCover-related nomenclatures have not yet been fully standardized, leading to confusing terms and making comparing historic measures difficult. With the issues potentially arising from an increasing diversity of fCover and related quantities estimation methods and corresponding uncertainties, there is also a growing need to spread knowledge on the current advances, challenges, and perspectives, especially in the context of no such existing review for ground- and aerial- based estimation. This paper provides the current knowledge mainly concerning passive image-based methods and active light detection and ranging (LiDAR) -based methods. We first harmonized the definitions of fCover and its related quantities (e.g., effective canopy cover, crown cover, stratified vegetation cover, and canopy fraction). Secondly, the typical applications of fCover and related quantities over a range of scales, fields, and ecosystems were summarized. Thirdly yet importantly, we offered a comprehensive review of traditional non-imaging methods, image-based methods (e.g., segmentation, unmixing, and spectral retrieval), point cloud-based methods (e.g., rasterization), and LiDAR return-based methods (e.g., return number index and return intensity retrieval) across different platforms (i.e., ground, unmanned aerial vehicle (UAV) and airplane). Our investigation of fCover and related quantities estimation touches upon various vegetation ecosystems, including agriculture cropland, grassland, wetland, and forest. Finally, the current challenges and future directions were discussed, such as image signal processing under complex heterogeneous surfaces and stratified cover and non-photosynthesis cover retrieval. We, therefore, expect that this review may offer an insight into fCover and related quantities estimation and serve as a reference for remote sensing scientists, agronomists, silviculturists, and ecologists. © 2023 International Society for Photogrammetry and Remote Sensing, Inc. (ISPRS)
🔗 Vai alla pubblicazione
2023
Rivista
ISPRS Journal of Photogrammetry and Remote Sensing
Dettagli
Vol. 199 pp. 133 - 156
DOI
Words apart: Standardizing forestry terms and definitions across European biodiversity studies
Trentanovi , Giovanni , Campagnaro , Thomas , Sitzia , Tommaso , Chianucci , Francesco , Vacchiano , Giorgio , Ammer , Christian , Ciach , Michał , Nagel , Thomas A. , del Río , Miren , Paillet , Yoan , Munzi , Silvana , Vandekerkhove , Kris , Bravo-Oviedo , Andrés , Cutini , Andrea , D'Andrea , Ettore , de Smedt , Pallieter , Doerfler , Inken , Fotakis , Dimitrios G. , Heilmann-Clausen , Jacob , Hofmeister , Jeňýk , Hošek , Jan , Janssen , Philippe , Kepfer-Rojas , Sebastian , Korboulewsky , Nathalie , Kovács , Bence , Kozák , Daniel , Lachat , Thibault , Mårell , Anders , Matula , Radim , Mikoláš , Martin , Nordén , Björn , Ódor , Péter , Perović , Marko , Pötzelsberger , Elisabeth , Schall , Peter , Svoboda , Miroslav , Tinya , Flóra , Ujházyová , Mariana , Burrascano , Sabina
forest management silviculture multi-taxon data harmonization terminology
Mostra abstract
Forest biodiversity studies conducted across Europe use a multitude of forestry terms, often inconsistently. This hinders the comparability across studies and makes the assessment of the impacts of forest management on biodiversity highly context-dependent. Recent attempts to standardize forestry and stand description terminology mostly used a top-down approach that did not account for the perspectives and approaches of forest biodiversity experts. This work aims to establish common standards for silvicultural and vegetation definitions, creating a shared conceptual framework for a consistent study on the effects of forest management on biodiversity. We have identified both strengths and weaknesses of the silvicultural and vegetation information provided in forest biodiversity studies. While quantitative data on forest biomass and dominant tree species are frequently included, information on silvicultural activities and vegetation composition is often lacking, shallow, or based on broad and heterogeneous classifications. We discuss the existing classifications and their use in European forest biodiversity studies through a novel bottom-up and top-driven review process, and ultimately propose a common framework. This will enhance the comparability of forest biodiversity studies in Europe, and puts the basis for effective implementation and monitoring of sustainable forest management policies. The standards here proposed are potentially adaptable and applicable to other geographical areas and could be extended to other forest interventions. © 2023 The Authors
🔗 Vai alla pubblicazione
2023
Rivista
Forest Ecosystems
Dettagli
Vol. 10
DOI
MASTREE+: Time-series of plant reproductive effort from six continents
Hacket-Pain , Andrew J. , Foest , Jessie J. , Pearse , Ian S. , LaMontagne , Jalene M. , Koenig , Walter D. , Vacchiano , Giorgio , Bogdziewicz , Michał , Caignard , Thomas , Celebias , Paulina , van Dormolen , Joep , Fernández-Martínez , Marcos , Moris , Jose V. , Palaghianu , Ciprian , Pesendorfer , Mario B. , Satake , Akiko , Schermer , Éliane , Tanentzap , Andrew J. , Thomas , Peter A. , Vecchio , Davide , Wion , Andreas P. , Wohlgemuth , Thomas , Xue , Tingting , Abernethy , Katharine A. , Aravena Acuña , Marie Claire , Barrera , Marcelo Daniel , Barton , Jessica H. , Boutin , Stan A. , Bush , Emma R. , Donoso Calderón , Sergio R. , Carevic , Felipe S. , Castilho , Carolina V. , Manuel Cellini , Juan , Chapman , Colin A. , Chapman , H. M. , Chianucci , Francesco , Costa , Patricia Da , Croisé , Luc , Cutini , Andrea , Dantzer , Ben J. , DeRose , Robert Justin , Dikangadissi , Jean Thoussaint , Dimoto , Edmond , da Fonseca , Fernanda Lopes , Gallo , Leonardo Ariel , Gratzer , Georg , Greene , David F. , Hadad , Martín Ariel , Huertas Herrera , Alejandro , Jeffery , Kathryn J. , Johnstone , Jill F. , Kalbitzer , Urs , Kantorowicz , Władysław , Klimas , Christie Ann , Lageard , Jonathan G.A. , Lane , Jeffrey E. , Lapin , Katharina , Ledwoń , Mateusz , Leeper , Abigail C. , Lencinas , María Vanessa , Lira-Guedes , Ana Cláudia , Lordon , Michael C. , Marchelli , Paula , Marino , Shealyn , Schmidt van Marle , Harald , McAdam , Andrew G. , Momont , Ludovic R.W. , Nicolas , Manuel , de Oliveira Wadt , Lúcia Helena , Panahi , Parisa , Martínez Pastur , Guillermo J. , Patterson , Thomas W. , Luis Peri , Pablo , Piechnik , Łukasz , Pourhashemi , Mehdi , Espinoza Quezada , Claudia , Roig , Fidel Alejandro , Peña-Rojas , Karen A. , Rosas , Yamina Micaela , Schueler , Silvio , Seget , Barbara , Soler , Rosina M. , Steele , Michael A. , Toro Manríquez , Mónica Del Rosario , Tutin , Caroline E.G. , Ukizintambara , Tharcisse , White , Lee J.T. , Yadok , Biplang Godwill , Willis , John L. , Zolles , Anita , Żywiec , Magdalena , Ascoli , Davide
plant reproduction masting demography flowering general flowering recruitment regeneration
Mostra abstract
Significant gaps remain in understanding the response of plant reproduction to environmental change. This is partly because measuring reproduction in long-lived plants requires direct observation over many years and such datasets have rarely been made publicly available. Here we introduce MASTREE+, a data set that collates reproductive time-series data from across the globe and makes these data freely available to the community. MASTREE+ includes 73,828 georeferenced observations of annual reproduction (e.g. seed and fruit counts) in perennial plant populations worldwide. These observations consist of 5971 population-level time-series from 974 species in 66 countries. The mean and median time-series length is 12.4 and 10 years respectively, and the data set includes 1122 series that extend over at least two decades (≥20 years of observations). For a subset of well-studied species, MASTREE+ includes extensive replication of time-series across geographical and climatic gradients. Here we describe the open-access data set, available as a.csv file, and we introduce an associated web-based app for data exploration. MASTREE+ will provide the basis for improved understanding of the response of long-lived plant reproduction to environmental change. Additionally, MASTREE+ will enable investigation of the ecology and evolution of reproductive strategies in perennial plants, and the role of plant reproduction as a driver of ecosystem dynamics. © 2022 The Authors. Global Change Biology published by John Wiley & Sons Ltd.
🔗 Vai alla pubblicazione
2022
Rivista
Global Change Biology
Dettagli
Vol. 28 (9) pp. 3066 - 3082
DOI
Ultrahigh-resolution boreal forest canopy mapping: Combining UAV imagery and photogrammetric point clouds in a deep-learning-based approach
Li , Linyuan , Mu , Xihan , Chianucci , Francesco , Qi , Jianbo , Jiang , Jingyi , Zhou , Jiaxin , Chen , Ling , Huang , Huaguo , Yan , Guangjian , Liu , Shouyang
crown cover canopy mapping image overlap self-supervised deep learning sfm point cloud uav imagery
Mostra abstract
Accurate wall-to-wall estimation of forest crown cover is critical for a wide range of ecological studies. Notwithstanding the increasing use of UAVs in forest canopy mapping, the ultrahigh-resolution UAV imagery requires an appropriate procedure to separate the contribution of understorey from overstorey vegetation, which is complicated by the spectral similarity between the two forest components and the illumination environment. In this study, we investigated the integration of deep learning and the combined data of imagery and photogrammetric point clouds for boreal forest canopy mapping. The procedure enables the automatic creation of training sets of tree crown (overstorey) and background (understorey) data via the combination of UAV images and their associated photogrammetric point clouds and expands the applicability of deep learning models with self-supervision. Based on the UAV images with different overlap levels of 12 conifer forest plots that are categorized into “I”, “II” and “III” complexity levels according to illumination environment, we compared the self-supervised deep learning-predicted canopy maps from original images with manual delineation data and found an average intersection of union (IoU) larger than 0.9 for “complexity I” and “complexity II” plots and larger than 0.75 for “complexity III” plots. The proposed method was then compared with three classical image segmentation methods (i.e., maximum likelihood, Kmeans, and Otsu) in the plot-level crown cover estimation, showing outperformance in overstorey canopy extraction against other methods. The proposed method was also validated against wall-to-wall and pointwise crown cover estimates using UAV LiDAR and in situ digital cover photography (DCP) benchmarking methods. The results showed that the model-predicted crown cover was in line with the UAV LiDAR method (RMSE of 0.06) and deviate from the DCP method (RMSE of 0.18). We subsequently compared the new method and the commonly used UAV structure-from-motion (SfM) method at varying forward and lateral overlaps over all plots and a rugged terrain region, yielding results showing that the method-predicted crown cover was relatively insensitive to varying overlap (largest bias of less than 0.15), whereas the UAV SfM-estimated crown cover was seriously affected by overlap and decreased with decreasing overlap. In addition, canopy mapping over rugged terrain verified the merits of the new method, with no need for a detailed digital terrain model (DTM). The new method is recommended to be used in various image overlaps, illuminations, and terrains due to its robustness and high accuracy. This study offers opportunities to promote forest ecological applications (e.g., leaf area index estimation) and sustainable management (e.g., deforestation). © 2022 The Author(s)
🔗 Vai alla pubblicazione
2022
Rivista
International Journal of Applied Earth Observation and Geoinformation
Dettagli
Vol. 107
DOI
Handbook of field sampling for multi-taxon biodiversity studies in European forests
Burrascano , Sabina , Trentanovi , Giovanni , Paillet , Yoan , Heilmann-Clausen , Jacob , Giordani , P. , Bagella , Simonetta , Bravo-Oviedo , Andrés , Campagnaro , Thomas , Campanaro , Alessandro , Chianucci , Francesco , de Smedt , Pallieter , Itziar , García Mijangos , Matošević , Dinka , Sitzia , Tommaso , Aszalós , Réka , Brazaitis , Gediminas , Cutini , Andrea , D'Andrea , Ettore , Doerfler , Inken , Hofmeister , Jeňýk , Hošek , Jan , Janssen , Philippe , Kepfer-Rojas , Sebastian , Korboulewsky , Nathalie , Kozák , Daniel , Lachat , Thibault , Lõhmus , Asko , López , Rosana , Mårell , Anders , Matula , Radim , Mikoláš , Martin , Munzi , Silvana , Nordén , Björn , Pärtel , Meelis , Penner , Johannes , Runnel , Kadri , Schall , Peter , Svoboda , Miroslav , Tinya , Flóra , Ujházyová , Mariana , Vandekerkhove , Kris , Verheyen , Kris , Xystrakis , Fotios , Ódor , Péter
biodiversity forest stand structure multi-taxon field methods indicators sampling protocol
Mostra abstract
Forests host most terrestrial biodiversity and their sustainable management is crucial to halt biodiversity loss. Although scientific evidence indicates that sustainable forest management (SFM) should be assessed by monitoring multi-taxon biodiversity, most current SFM criteria and indicators account only for trees or consider indirect biodiversity proxies. Several projects performed multi-taxon sampling to investigate the effects of forest management on biodiversity, but the large variability of their sampling approaches hampers the identification of general trends, and limits broad-scale inference for designing SFM. Here we address the need of common sampling protocols for forest structure and multi-taxon biodiversity to be used at broad spatial scales. We established a network of researchers involved in 41 projects on forest multi-taxon biodiversity across 13 European countries. The network data structure comprised the assessment of at least three taxa, and the measurement of forest stand structure in the same plots or stands. We mapped the sampling approaches to multi-taxon biodiversity, standing trees and deadwood, and used this overview to provide operational answers to two simple, yet crucial, questions: what to sample? How to sample? The most commonly sampled taxonomic groups are vascular plants (83% of datasets), beetles (80%), lichens (66%), birds (66%), fungi (61%), bryophytes (49%). They cover different forest structures and habitats, with a limited focus on soil, litter and forest canopy. Notwithstanding the common goal of assessing forest management effects on biodiversity, sampling approaches differed widely within and among taxonomic groups. Differences derive from sampling units (plots size, use of stand vs. plot scale), and from the focus on different substrates or functional groups of organisms. Sampling methods for standing trees and lying deadwood were relatively homogeneous and focused on volume calculations, but with a great variability in sampling units and diameter thresholds. We developed a handbook of sampling methods (SI 3) aimed at the greatest possible comparability across taxonomic groups and studies as a basis for European-wide biodiversity monitoring programs, robust understanding of biodiversity response to forest structure and management, and the identification of direct indicators of SFM. © 2021 The Authors
🔗 Vai alla pubblicazione
2021
Rivista
Ecological Indicators
Dettagli
Vol. 132
DOI
Comparison of seven inversion models for estimating plant andwoody area indices of leaf-on and leaf-off forest canopy using explicit 3D forest scenes
Zou , Jie , Zhuang , Yinguo , Chianucci , Francesco , Mai , Chunna , Lin , Weimu , Leng , Peng , Luo , Shezhou , Yan , Bojie
forest canopy canopy element and woody component projection functions clumping effect digital hemispherical photography forest scenes inversion model leaf area index (lai) plant area index (pai) woody area index (wai)
Mostra abstract
Optical methods require model inversion to infer plant area index (PAI) and woody area index (WAI) of leaf-on and leaf-off forest canopy from gap fraction or radiation attenuation measurements. Several inversion models have been developed previously, however, a thorough comparison of those inversion models in obtaining the PAI and WAI of leaf-on and leaf-off forest canopy has not been conducted so far. In the present study, an explicit 3D forest scene series with different PAI,WAI, phenological periods, stand density, tree species composition, plant functional types, canopy element clumping index, and woody component clumping index was generated using 50 detailed 3D tree models. The explicit 3D forest scene series was then used to assess the performance of seven commonly used inversion models to estimate the PAI andWAI of the leaf-on and leaf-off forest canopy. The PAI andWAI estimated from the seven inversion models and simulated digital hemispherical photography images were compared with the true PAI and WAI of leaf-on and leaf-off forest scenes. Factors that contributed to the differences between the estimates of the seven inversion models were analyzed. Results show that both the factors of inversion model, canopy element and woody component projection functions, canopy element and woody component estimation algorithms, and segment size are contributed to the differences between the PAI and WAI estimated from the seven inversion models. There is no universally valid combination of inversion model, needle-to-shoot area ratio, canopy element and woody component clumping index estimation algorithm, and segment size that can accurately measure the PAI and WAI of all leaf-on and leaf-off forest canopies. The performance of the combinations of inversion model, needle-to-shoot area ratio, canopy element and woody component clumping index estimation algorithm, and segment size to estimate the PAI and WAI of leaf-on and leaf-off forest canopies is the function of the inversion model as well as the canopy element and woody component clumping index estimation algorithm, segment size, PAI,WAI, tree species composition, and plant functional types. The impact of canopy element and woody component projection function measurements on the PAI and WAI estimation of the leaf-on and leaf-off forest canopy can be reduced to a low level ( < 4%) by adopting appropriate inversion models. © 2018 by the authors.
🔗 Vai alla pubblicazione
2018
Rivista
Remote Sensing
Dettagli
Vol. 10 (8)
DOI