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Benchmarking tree species classification from proximally sensed laser scanning data: Introducing the FOR-species20K dataset
Puliti , Stefano , Lines , Emily R. , Müllerová , Jana , Frey , Julian , Schindler , Zoe , Straker , Adrian , Allen , Matthew J. , Winiwarter , Lukas , Rehush , Nataliia , Hristova , Hristina S. , Murray , Brent A. , Calders , Kim , Coops , Nicholas C. , Höfle , Bernhard , Irwin , Liam A.K. , Junttila , Samuli , Kruček , Martin , Krok , G. , Král , Kamil , Levick , Shaun R. , Lück , Linda , Missarov , Azim , Mokroš , M. , Owen , Harry Jon Foord , Stereńczak , Krzysztof Jan , Pitkänen , Timo P. , Puletti , Nicola , Saarinen , Ninni , Hopkinson , Chris Dennis , Terryn , Louise , Torresan , C. , Tomelleri , Enrico , Weiser , Hannah , Astrup , Rasmus
lidar remote sensing biodiversity deep learning point cloud classification single-tree inventory
Mostra abstract
Proximally sensed laser scanning presents new opportunities for automated forest ecosystem data capture. However, a gap remains in deriving ecologically pertinent information, such as tree species, without additional ground data. Artificial intelligence approaches, particularly deep learning (DL), have shown promise towards automation. Progress has been limited by the lack of large, diverse, and, most importantly, openly available labelled single-tree point cloud datasets. This has hindered both (1) the robustness of the DL models across varying data types (platforms and sensors) and (2) the ability to effectively track progress, thereby slowing the convergence towards best practice for species classification. To address the above limitations, we compiled the FOR-species20K benchmark dataset, consisting of individual tree point clouds captured using proximally sensed laser scanning data from terrestrial (TLS), mobile (MLS) and drone laser scanning (ULS). Compiled collaboratively, the dataset includes data collected in forests mainly across Europe, covering Mediterranean, temperate and boreal biogeographic regions. It includes scattered tree data from other continents, totaling over 20,000 trees of 33 species and covering a wide range of tree sizes and forms. Alongside the release of FOR-species20K, we benchmarked seven leading DL models for individual tree species classification, including both point cloud (PointNet++, MinkNet, MLP-Mixer, DGCNNs) and multi-view 2D-based methods (SimpleView, DetailView, YOLOv5). 2D Image-based models had, on average, higher overall accuracy (0.77) than 3D point cloud-based models (0.72). Notably, the performance was consistently >0.8 across scanning platforms and sensors, offering versatility in deployment. The top-scoring model, DetailView, demonstrated robustness to training data imbalances and effectively generalized across tree sizes. The FOR-species20K dataset represents an important asset for developing and benchmarking DL models for individual tree species classification using proximally sensed laser scanning data. As such, it serves as a crucial foundation for future efforts to classify accurately and map tree species at various scales using laser scanning technology, as it provides the complete code base, dataset, and an initial baseline representative of the current state-of-the-art of point cloud tree species classification methods. © 2025 The Author(s). Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
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2025
Rivista
Methods in Ecology and Evolution
Dettagli
Vol. 16 (4) pp. 801 - 818
DOI
Estimated biomass loss caused by the vaia windthrow in northern italy: Evaluation of active and passive remote sensing options
Vaglio Laurin , Gaia , Puletti , Nicola , Tattoni , Clara , Ferrara , Carlotta , Pirotti , Francesco
sar lidar forest biomass windthrown
Mostra abstract
Windstorms are a major disturbance factor for European forests. The 2018 Vaia storm, felled large volumes of timber in Italy causing serious ecological and financial losses. Remote sensing is fundamental for primary assessment of damages and post‐emergency phase. An explicit estimation of the timber loss caused by Vaia using satellite remote sensing was not yet undertaken. In this investigation, three different estimates of timber loss were compared in two study sites in the Alpine area: pre‐existing local growing stock volume maps based on lidar data, a recent national‐level forest volume map, and an novel estimation of AGB values based on active and passive remote sensing. The compared datasets resemble the type of information that a forest manager might potentially find or produce. The results show a significant disagreement in the different biomass estimates, related to the methods used to produce them, the study areas characteristics, and the size of the damaged areas. These sources of uncertainty highlight the difficulty of estimating timber loss, unless a unified national or regional European strategy to improve preparedness to forest hazards is defined. Considering the frequent impacts on forest resources that occurred in the last years in the European Union, remote sensing‐based surveys targeting forests is urgent, particularly for the many European countries that still lack reliable forest stocks data. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
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2021
Rivista
Remote Sensing
Dettagli
Vol. 13 (23)
DOI
Species dominance and above ground biomass in the Białowieża Forest, Poland, described by airborne hyperspectral and lidar data
Vaglio Laurin , Gaia , Puletti , Nicola , Grotti , Mirko , Stereńczak , Krzysztof Jan , Modzelewska , Aneta , Lisiewicz , Maciej , Sadkowski , Rafał , Kuberski , Łukasz , Chirici , Gherardo , Papale , Dario
climate change lidar aboveground biomass algorithm data set deciduous tree species diversity species richness vegetation dynamics bialowieza forest scolytinae
Mostra abstract
The objective of this research is to test and evaluate hyperspectral and lidar data to derive information on tree species dominance and above ground biomass in the Białowieża Forest in Poland. This forest is threatened by climate change, fire, bark beetles attacks, and logging, with changes in species composition and dominance. In this conservation valuable area, the monitoring of forest resources is thus critical. Results indicate that vegetation indices from hyperspectral data can support species dominance detection: using a Classification and Regression Trees algorithm the three main plot types (dominated by Deciduous, Spruce, and Pines species) were classified with an Overall Accuracy > 0.9. The accuracy decreased when a ‘Mixed’ group was added to account for very heterogeneous plots, and plots dominated by Spruce were not correctly detected. Hyperspectral vegetation indices were also used to estimate the level of species dominance in the forest plots, using a Multivariate Multiple Linear Regression model; the obtained accuracy varied according to groups, being higher for Deciduous (R<sup>2</sup> = 0.87), compared to Pines (R<sup>2</sup> = 0.61), and to Spruce-dominated plots (R<sup>2</sup> = 0.37). Lidar data were employed to estimate above ground biomass, using an exponential regression model; overall the R<sup>2</sup> resulted equal to 0.66 but ranged from 0.57 to 0.78 when considering subgroups according to species dominance; the addition of hyperspectral vegetation indices improved the result only for Pines. The illustrated methods provide a reliable description of important forest characteristics and simplify resource monitoring, supporting local authorities to address the challenges imposed by climate change and other forest threats. © 2020 The Authors
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2020
Rivista
International Journal of Applied Earth Observation and Geoinformation
Dettagli
Vol. 92
DOI
Global airborne laser scanning data providers database (GlobALS)-A new tool for monitoring ecosystems and biodiversity
Stereńczak , Krzysztof Jan , Vaglio Laurin , Gaia , Chirici , Gherardo , Coomes , David Anthony , Dalponte , Michele , Latifi , Hooman , Puletti , Nicola
lidar forest database globals networking
Mostra abstract
Protection and recovery of natural resource and biodiversity requires accurate monitoring at multiple scales. Airborne Laser Scanning (ALS) provides high-resolution imagery that is valuable for monitoring structural changes to vegetation, providing a reliable reference for ecological analyses and comparison purposes, especially if used in conjunction with other remote-sensing and field products. However, the potential of ALS data has not been fully exploited, due to limits in data availability and validation. To bridge this gap, the global network for airborne laser scanner data (GlobALS) has been established as a worldwide network of ALS data providers that aims at linking those interested in research and applications related to natural resources and biodiversity monitoring. The network does not collect data itself but collects metadata and facilitates networking and collaborative research amongst the end-users and data providers. This letter describes this facility, with the aim of broadening participation in GlobALS. © 2020 by the authors.
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2020
Rivista
Remote Sensing
Dettagli
Vol. 12 (11)
DOI
Integrating terrestrial and airborne laser scanning for the assessment of single-tree attributes in Mediterranean forest stands
Giannetti , Francesca , Puletti , Nicola , Quatrini , Valerio , Travaglini , Davide , Bottalico , Francesca , Corona , P. , Chirici , Gherardo
lidar remote sensing precision forestry forest structure forest inventories proximal sensing
Mostra abstract
The development of laser scanning technologies has gradually modified methods for forest mensuration and inventory. The main objective of this study is to assess the potential of integrating ALS and TLS data in a complex mixed Mediterranean forest for assessing a set of five single-tree attributes: tree position (TP), stem diameter at breast height (DBH), tree height (TH), crown base height (CBH) and crown projection area radii (CPAR). Four different point clouds were used: from ZEB1, a hand-held mobile laser scanner (HMLS), and from FARO® FOCUS 3D, a static terrestrial laser scanner (TLS), both alone or in combination with ALS. The precision of single-tree predictions, in terms of bias and root mean square error, was evaluated against data recorded manually in the field with traditional instruments. We found that: (i) TLS and HMLS have excellent comparable performances for the estimation of TP, DBH and CPAR; (ii) TH was correctly assessed by TLS, while the accuracy by HMLS was lower; (iii) CBH was the most difficult attribute to be reliably assessed and (iv) the integration with ALS increased the performance of the assessment of TH and CPAR with both HMLS and TLS. © 2018, © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
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2018
Rivista
European Journal of Remote Sensing
Dettagli
Vol. 51 (1) pp. 795 - 807
DOI
Above ground biomass and tree species richness estimation with airborne lidar in tropical Ghana forests
Vaglio Laurin , Gaia , Puletti , Nicola , Chen , Qi , Corona , P. , Papale , Dario , Valentini , Riccardo
lidar biomass species richness carbon monitoring tropical forests west africa
Mostra abstract
Estimates of forest aboveground biomass are fundamental for carbon monitoring and accounting; delivering information at very high spatial resolution is especially valuable for local management, conservation and selective logging purposes. In tropical areas, hosting large biomass and biodiversity resources which are often threatened by unsustainable anthropogenic pressures, frequent forest resources monitoring is needed. Lidar is a powerful tool to estimate aboveground biomass at fine resolution; however its application in tropical forests has been limited, with high variability in the accuracy of results. Lidar pulses scan the forest vertical profile, and can provide structure information which is also linked to biodiversity. In the last decade the remote sensing of biodiversity has received great attention, but few studies focused on the use of lidar for assessing tree species richness in tropical forests. This research aims at estimating aboveground biomass and tree species richness using discrete return airborne lidar in Ghana forests. We tested an advanced statistical technique, Multivariate Adaptive Regression Splines (MARS), which does not require assumptions on data distribution or on the relationships between variables, being suitable for studying ecological variables. We compared the MARS regression results with those obtained by multilinear regression and found that both algorithms were effective, but MARS provided higher accuracy either for biomass (R<sup>2</sup> = 0.72) and species richness (R<sup>2</sup> = 0.64). We also noted strong correlation between biodiversity and biomass field values. Even if the forest areas under analysis are limited in extent and represent peculiar ecosystems, the preliminary indications produced by our study suggest that instrument such as lidar, specifically useful for pinpointing forest structure, can also be exploited as a support for tree species richness assessment. © 2016 Elsevier B.V.
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2016
Rivista
International Journal of Applied Earth Observation and Geoinformation
Dettagli
Vol. 52 pp. 371 - 379
DOI
Development and performance assessment of a low-cost UAV laser scanner system (LasUAV)
Torresan , C. , Berton , Andrea , Carotenuto , Federico , Chiavetta , U. , Miglietta , F. , Zaldei , Alessandro , Gioli , Beniamino
lidar forest monitoring global navigation satellite system real-time kinematics technology system designing system testing
Mostra abstract
This study reports on a low-cost unmanned aerial vehicle (UAV)-borne light detection and ranging (LiDAR) system called LasUAV, from hardware selection and integration to the generation of three-dimensional point clouds, and an assessment of its performance. Measurement uncertainties were estimated in angular static, angular dynamic, and real flight conditions. The results of these experiments indicate that the point cloud elevation accuracy in the case of angular static acquisition was 3.8 cm, and increased to 3.9 cm in angular dynamic acquisition. In-flight data were acquired over a target surveyed by nine single passages in different flight directions and platform orientations. In this case, the uncertainty of elevation ranged between 5.1 cm and 9.8 cm for each single passage. The combined elevation uncertainty in the case of multiple passages (i.e., the combination of one to nine passages from the set of nine passages) ranged between 5 cm (one passage) and 16 cm (nine passages). The study demonstrates that the positioning device, i.e., the Global Navigation Satellite System real-time kinematic (GNSS RTK) receiver, is the sensor that mostly influences the system performance, followed by the attitude measurement device and the laser sensor. Consequently, strong efforts and greater economic investment should be devoted to GNSS RTK receivers in low-cost custom integrated systems. © 2018 by the authors.
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2018
Rivista
Remote Sensing
Dettagli
Vol. 10 (7)
DOI