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Benchmarking tree species classification from proximally sensed laser scanning data: Introducing the FOR-species20K dataset
Puliti , Stefano , Lines , Emily R. , Müllerová , Jana , Frey , Julian , Schindler , Zoe , Straker , Adrian , Allen , Matthew J. , Winiwarter , Lukas , Rehush , Nataliia , Hristova , Hristina S. , Murray , Brent A. , Calders , Kim , Coops , Nicholas C. , Höfle , Bernhard , Irwin , Liam A.K. , Junttila , Samuli , Kruček , Martin , Krok , G. , Král , Kamil , Levick , Shaun R. , Lück , Linda , Missarov , Azim , Mokroš , M. , Owen , Harry Jon Foord , Stereńczak , Krzysztof Jan , Pitkänen , Timo P. , Puletti , Nicola , Saarinen , Ninni , Hopkinson , Chris Dennis , Terryn , Louise , Torresan , C. , Tomelleri , Enrico , Weiser , Hannah , Astrup , Rasmus
lidar remote sensing biodiversity deep learning point cloud classification single-tree inventory
Mostra abstract
Proximally sensed laser scanning presents new opportunities for automated forest ecosystem data capture. However, a gap remains in deriving ecologically pertinent information, such as tree species, without additional ground data. Artificial intelligence approaches, particularly deep learning (DL), have shown promise towards automation. Progress has been limited by the lack of large, diverse, and, most importantly, openly available labelled single-tree point cloud datasets. This has hindered both (1) the robustness of the DL models across varying data types (platforms and sensors) and (2) the ability to effectively track progress, thereby slowing the convergence towards best practice for species classification. To address the above limitations, we compiled the FOR-species20K benchmark dataset, consisting of individual tree point clouds captured using proximally sensed laser scanning data from terrestrial (TLS), mobile (MLS) and drone laser scanning (ULS). Compiled collaboratively, the dataset includes data collected in forests mainly across Europe, covering Mediterranean, temperate and boreal biogeographic regions. It includes scattered tree data from other continents, totaling over 20,000 trees of 33 species and covering a wide range of tree sizes and forms. Alongside the release of FOR-species20K, we benchmarked seven leading DL models for individual tree species classification, including both point cloud (PointNet++, MinkNet, MLP-Mixer, DGCNNs) and multi-view 2D-based methods (SimpleView, DetailView, YOLOv5). 2D Image-based models had, on average, higher overall accuracy (0.77) than 3D point cloud-based models (0.72). Notably, the performance was consistently >0.8 across scanning platforms and sensors, offering versatility in deployment. The top-scoring model, DetailView, demonstrated robustness to training data imbalances and effectively generalized across tree sizes. The FOR-species20K dataset represents an important asset for developing and benchmarking DL models for individual tree species classification using proximally sensed laser scanning data. As such, it serves as a crucial foundation for future efforts to classify accurately and map tree species at various scales using laser scanning technology, as it provides the complete code base, dataset, and an initial baseline representative of the current state-of-the-art of point cloud tree species classification methods. © 2025 The Author(s). Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
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2025
Rivista
Methods in Ecology and Evolution
Dettagli
Vol. 16 (4) pp. 801 - 818
DOI
The Relationship Between Maturation Size and Maximum Tree Size From Tropical to Boreal Climates
Journé , Valentin , Bogdziewicz , Michał , Courbaud , Benoít , Kunstler , Georges , Qiu , Tong , Aravena Acuña , Marie Claire , Ascoli , Davide , Bergeron , Yves , Berveiller , Daniel , Boivin , Thomas , Bonal , Raúl , Caignard , Thomas , Cailleret , Maxime , Calama , Rafael A. , Camarero , Jesús Julio , Chang-Yang , Chia Hao , Chave , Jérôme , Chianucci , Francesco , Curt , Thomas , Cutini , Andrea , Das , Adrian J. , Daskalakou , Evangelia N. , Davi , Hendrik , Delpierre , Nicolas , Delzon , Sylvain , Dietze , Michael C. , Calderon , Sergio Donoso , Dormont , Laurent , Espelta , Josep Maria , Farfan-Rios , William R. , Fenner , Michael , Franklin , Jerry F. , Gehring , Catherine A. , Gilbert , Gregory S. , Gratzer , Georg , Greenberg , Cathryn H. , Guignabert , Arthur , Guo , Qinfeng , Hacket-Pain , Andrew J. , Hampe , Arndt , Han , Qingmin , Hanley , Mick E. , Hille Ris Lambers , Janneke , Holik , Jan , Hoshizaki , K. , Ibáñez , Inés , Johnstone , Jill F. , Knops , Johannes Michael Hubertus , Kobe , Richard K. , Kurokawa , Hiroko , Lageard , Jonathan G.A. , LaMontagne , Jalene M. , Ledwoń , Mateusz , Lefèvre , François , Leininger , Theodor D. , Limousin , Jean Marc , Lutz , James A. , Macias , Diana S. , Mårell , Anders , McIntire , Eliot J.B. , Moran , Emily V. , Motta , Renzo , Myers , Jonathan A. , Nagel , Thomas A. , Naoe , Shoji , Noguchi , Mahoko , Norghauer , Julian M. , Oguro , Michio , Ourcival , Jean Marc , Parmenter , Robert R. , Pearse , Ian S. , Pérez-Ramos , Ignacio M. , Piechnik , Łukasz , Podgórski , Tomasz , Poulsen , John R. , Redmond , Miranda D. , Reid , Chantal D. , Šamonil , Pavel , Scher , C. Lane , Schlesinger , William H. , Seget , Barbara , Sharma , Shubhi , Shibata , Mitsue , Silman , Miles R. , Steele , Michael A. , Stephenson , Nathan L. , Straub , Jacob N. , Sutton , Samantha , Swenson , Jennifer J. , Swift , Margaret , Thomas , Peter A. , Uríarte , María , Vacchiano , Giorgio , Whipple , Amy Vaughn , Whitham , Thomas G. , Wright , Stuart Joseph , Zhu , Kai , Zimmerman , Jess K. , Żywiec , Magdalena , Clark , James S.
seed production allometry life history size tree fecundity tree maturation
Mostra abstract
The fundamental trade-off between current and future reproduction has long been considered to result in a tendency for species that can grow large to begin reproduction at a larger size. Due to the prolonged time required to reach maturity, estimates of tree maturation size remain very rare and we lack a global view on the generality and the shape of this trade-off. Using seed production from five continents, we estimate tree maturation sizes for 486 tree species spanning tropical to boreal climates. Results show that a species' maturation size increases with maximum size, but in a non-proportional way: the largest species begin reproduction at smaller sizes than would be expected if maturation were simply proportional to maximum size. Furthermore, the decrease in relative maturation size is steepest in cold climates. These findings on maturation size drivers are key to accurately represent forests' responses to disturbance and climate change. © 2024 John Wiley & Sons Ltd.
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2024
Rivista
Ecology Letters
Dettagli
Vol. 27 (9)
DOI
Where are we now with European forest multi-taxon biodiversity and where can we head to?
Burrascano , Sabina , Chianucci , Francesco , Trentanovi , Giovanni , Kepfer-Rojas , Sebastian , Sitzia , Tommaso , Tinya , Flóra , Doerfler , Inken , Paillet , Yoan , Nagel , Thomas A. , Mitić , Božena , Morillas , Lourdes , Munzi , Silvana , Van Der Sluis , Theo , Alterio , Edoardo , Balducci , Lorenzo , de Andrade , Rafael Barreto , Bouget , Christophe , Giordani , P. , Lachat , Thibault , Matošević , Dinka , Napoleone , Francesca , Nascimbene , Juri , Paniccia , Chiara , Roth , Nicolas , Aszalós , Réka , Brazaitis , Gediminas , Cutini , Andrea , D'Andrea , Ettore , de Smedt , Pallieter , Heilmann-Clausen , Jacob , Janssen , Philippe , Kozák , Daniel , Mårell , Anders , Mikoláš , Martin , Nordén , Björn , Matula , Radim , Schall , Peter , Svoboda , Miroslav , Ujházyová , Mariana , Vandekerkhove , Kris , Wohlwend , Michael Rudolf , Xystrakis , Fotios , Aleffi , Michele , Ammer , Christian , Archaux , Frédéric , Asbeck , Thomas , N Avtzis , Dimitrios N. , Ayasse , Manfred , Bagella , Simonetta , Balestrieri , Rosario , Barbati , Anna , Basile , Marco , Bergamini , Ariel , Bertini , Giada , Biscaccianti , Alessandro Bruno , Boch , Steffen , Bölöni , János , Bombi , Pierluigi , Boscardin , Yves , Brunialti , Giorgio , Bruun , Hans Henrik , Buscot , François , Byriel , David Bille , Campagnaro , Thomas , Campanaro , Alessandro , Chauvat , Matthieu , Ciach , Michał , Čiliak , Marek , Cistrone , Luca , Pereira , Joaò Manuel Cordeiro , Daniel , Rolf , de Cinti , Bruno , de Filippo , Gabriele , Dekoninck , Wouter , Di Salvatore , Umberto , Dumas , Yann , Elek , Zoltán , Ferretti , Fabrizio , Fotakis , Dimitrios G. , Frank , Tamás , Frey , Julian , Giancola , Carmen , Gömöryová , Erika , Gosselin , Marion , Gosselin , Frédéric , Goßner , Martin M. , Götmark , Frank , Haeler , Elena , Hansen , Aslak Kappel , Hertzog , Lionel R. , Hofmeister , Jeňýk , Hošek , Jan , Johannsen , Vivian Kvist , Justensen , Mathias Just , Korboulewsky , Nathalie , Kovács , Bence , Lakatos , Ferenc , Landivar , Carlos Miguel , Lens , Luc , Lingua , Emanuele
forest biodiversity biodiversity conservation forest stand structure multi-taxon sustainable management
Mostra abstract
The European biodiversity and forest strategies rely on forest sustainable management (SFM) to conserve forest biodiversity. However, current sustainability assessments hardly account for direct biodiversity indicators. We focused on forest multi-taxon biodiversity to: i) gather and map the existing information; ii) identify knowledge and research gaps; iii) discuss its research potential. We established a research network to fit data on species, standing trees, lying deadwood and sampling unit description from 34 local datasets across 3591 sampling units. A total of 8724 species were represented, with the share of common and rare species varying across taxonomic classes: some included many species with several rare ones (e.g., Insecta); others (e.g., Bryopsida) were represented by few common species. Tree-related structural attributes were sampled in a subset of sampling units (2889; 2356; 2309 and 1388 respectively for diameter, height, deadwood and microhabitats). Overall, multi-taxon studies are biased towards mature forests and may underrepresent the species related to other developmental phases. European forest compositional categories were all represented, but beech forests were over-represented as compared to thermophilous and boreal forests. Most sampling units (94%) were referred to a habitat type of conservation concern. Existing information may support European conservation and SFM strategies in: (i) methodological harmonization and coordinated monitoring; (ii) definition and testing of SFM indicators and thresholds; (iii) data-driven assessment of the effects of environmental and management drivers on multi-taxon forest biological and functional diversity, (iv) multi-scale forest monitoring integrating in-situ and remotely sensed information. © 2023 The Authors
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2023
Rivista
Biological Conservation
Dettagli
Vol. 284
DOI