Accurate in situ estimates of leaf area index (LAI) are essential for a wide range of ecological studies and applications. Due to the destructiveness and impracticality of direct measurements, indirect optical methods have mostly been used in the field to derive estimates of LAI from gap fraction measurements. Terrestrial laser scanning (TLS) is strongly supporting use of this active technology, which possesses several advantages compared to passive sensors. However, edge effects and partial beam interceptions are significantly challenges for the accurate retrieval of gap fraction from 3D point cloud data available from TLS, particularly in phase-shift instruments, which in turns require point cloud filtering to correct erroneous point measurements. As the limitations above influences the point cloud, we proposed a new method which is based only on the laser return intensity (LRI) information derived from raw TLS data, which are used to generate 2D intensity images. The intensity image contains all the unfiltered LRI information captured by TLS, which is used to separate gap from non-gap pixels, using a procedure comparable to the standard image analysis processing of digital hemispherical images. This allows a theoretically consistent comparison between active and passive optical measurements of gap fraction across all the zenith angle range. The method was tested in real and simulated forests. Gap fraction, canopy openness and effective leaf area index derived from real and simulated intensity TLS images were compared with those obtained using digital hemispherical photography (DHP). Results indicated that the intensity, image-based method outperformed DHP, as the higher pixel resolution of the intensity images and the larger distance covered by TLS allowed detection of many small canopy elements, particularly at higher zenith angles (longer optical distance), which are not detected in DHP. The main findings support the reliability of the intensity, image-based method to standardize protocols for TLS phase-shift scan data processing and use of the produced canopy estimates as a benchmark for passive optical measurements. © 2019 Elsevier B.V.

Understory is a key component of forest biodiversity. The structure of the forest stand and the horizontal composition of the canopy play a major role on the light regime of the understory, which in turn affects the abundance and the diversity of the understory plant community. Reliable assessments of canopy structural attributes are essential for forest research and biodiversity monitoring programs, as well as to study the relationship between canopy and understory plant communities. Canopy photography is a widely used method but it is still not clear which photographic techniques is better suited to capture canopy attributes at stand-level that can be relevant in forest biodiversity studies. For this purpose, we collected canopy structure and understory plant diversity data on 51 forest sites in the north-eastern Italian Alps, encompassing a diversity of forest types from low-elevation deciduous, to mixed montane stands to subalpine coniferous forests. Canopy images were acquired using both digital cover (DCP) and hemispherical (DHP) photography, and analysed canopy structural attributes. These attributes were then compared to tree species composition data to evaluate whether they were appropriate to differentiate between forest types. Additionally, we tested what canopy attributes derived from DCP and DHP best explained the species composition of vascular plants growing in the understory. We found that hemispherical canopy photography was most suitable to capture differences in forest types, which was best expressed by variables such as leaf inclination angle and canopy openness. On our sites, DHP-based canopy attributes were also able to better distinguish between different conifer forests. Leaf clumping was the most important attribute for determining plant species distribution of the understory, indicating that diverse gap structures create different microclimate conditions enhancing diverse plant species with different ecological strategies. This study supports the reliability of canopy photography to derive meaningful indicators in forest and biodiversity research, but also provide insights for increasing understory diversity in managed forests of high conservation value. © 2025

Hemispherical photography is a relevant tool to estimate canopy attributes such as leaf area index (LAI). Advancements in digital photography and image processing tools have supported long-lasting use of digital hemispherical photography (DHP). While some open-source tools exists for DHP, very few solutions have been made available in R programming packages, and none of these allows a full processing workflow to retrieve LAI and other canopy attributes from fisheye images. To fill this gap, we developed an R package (hemispheR) to support the whole processing of DHP images in an automated, fast, and reproducible way. The package functions, which are designed for step-by-step single-image analysis, can be performed sequentially in a pipeline, while allowing inspecting the quality of each image processing step. The package allows to analyze both circular and fullframe fisheye images, collected either with upward facing (forest canopies) or downward facing (short canopies and crops) camera orientation. In addition, the package allows to implement two consolidated LAI methods (LAI-2000/2200 and 57° method). A case study is presented to demonstrate the reliability of canopy attributes derived from hemispheR in temperate deciduous forests with variable canopy density and structure. Canopy attributes were validated against either results obtained from a reference proprietary software, either by benchmarking plot-level LAI with measurements obtained from littertraps. Results indicated hemispheR provide reliable openness and leaf area index in forest canopies as compared with reference values. We also found that combining hemispheR with other R packages further advance analysis of hemispherical canopy images, by reducing the sensitivity of results to camera exposure in both raw and non-raw canopy imagery. By providing a simple, transparent, and flexible image processing procedure, hemispheR supported the use of DHP for routine measurements and monitoring of forest canopy attributes. Hosting the package in a Git repository can further support development of the package, through either collaborative coding or forking projects. © 2023 Elsevier B.V.

Estimates of clumping index (Ω) are required to improve the indirect estimation of leaf area index (L) from optical field-based instruments such as digital hemispherical photography (DHP). A widely used method allows estimation of Ω from DHP using simple gap fraction averaging formulas (LX). This method is simple and effective but has the disadvantage of being sensitive to the spatial scale (i.e., the azimuth segment size in DHP) used for averaging and canopy density. In this study, we propose a new method to estimate Ω (LXG) based on ordered weighted gap fraction averaging (OWA) formulas, which addresses the disadvantages of LX and also accounts for gap size distribution. The new method was tested in 11 broadleaved forest stands in Italy; Ω estimated from LXG was compared with other commonly used clumping correction methods (LX, CC, and CLX). Results showed that LXG yielded more accurate Ω estimates, which were also more correlated with the values obtained from the gap size distribution methods (CC and CLX) than Ω obtained from LX. Leaf area index estimates, adjusted by LXG, are only 5%–6% lower than direct measurements obtained from litter traps, while other commonly used clumping correction methods yielded more underestimation. © 2019, Canadian Science Publishing. All rights reserved.

The "Bosco Fontana" natural reserve includes the last remaining mixed floodplain forest in northern Italy and one of the most endangered ecosystems in Europe. Its effective management is hindered by the complexity of interactions of mixed-tree species and the influence of environmental factors on understory plant diversity. In this study we analyzed the patterns of natural evolution in semi-natural floodplain forest stands at Bosco Fontana with the aim of better understanding its current natural processes and dynamics. Stand structure, taxonomic and functional diversity, species composition, and leaf area index (LAI) of overstory and understory layers were surveyed in permanent plots over two inventory years (1995, 2005). The influence of environmental factors on understory plant diversity was assessed using Ellenberg’s indices for light, soil moisture, soil nutrient and soil reaction. Results indicated that overstory species composition varies according to the soil moisture, with hornbeam prevailing in xeric sites and deciduous oak species in mesic sites. Xeric sites showed high functional dispersion in both drought and shade tolerant traits, while it was significantly lower in both overstory and understory in the moist site. Functional dispersion of drought tolerance in the overstory and understory layers was positively correlated, while species richness was negatively correlated between the two layers. Diversity in the understory was mainly correlated with soil conditions. Understory LAI was positively correlated with overstory LAI in xeric and mesic plots, while no correlations were found in the moist plot. Overall, our results suggest that site conditions (soil conditions and water availability) are the major drivers of understory and overstory dynamics in the study forest. Hence, local site conditions and the understory should be carefully considered in the management of mixed floodplain forests. © SISEF.

Accurate estimates of forest canopy are essential for the characterization of forest ecosystems. Remotely-sensed techniques provide a unique way to obtain estimates over spatially extensive areas, but their application is limited by the spectral and temporal resolution available from these systems, which is often not suited to meet regional or local objectives. The use of unmanned aerial vehicles (UAV) as remote sensing platforms has recently gained increasing attention, but their applications in forestry are still at an experimental stage. In this study we described a methodology to obtain rapid and reliable estimates of forest canopy from a small UAV equipped with a commercial RGB camera. The red, green and blue digital numbers were converted to the green leaf algorithm (GLA) and to the CIE L^*a^*b^* colour space to obtain estimates of canopy cover, foliage clumping and leaf area index (L) from aerial images. Canopy attributes were compared with in situ estimates obtained from two digital canopy photographic techniques (cover and fisheye photography). The method was tested in beech forests. UAV images accurately quantified canopy cover even in very dense stand conditions, despite a tendency to not detecting small within-crown gaps in aerial images, leading to a measurement of a quantity much closer to crown cover estimated from in situ cover photography. Estimates of L from UAV images significantly agreed with that obtained from fisheye images, but the accuracy of UAV estimates is influenced by the appropriate assumption of leaf angle distribution. We concluded that true colour UAV images can be effectively used to obtain rapid, cheap and meaningful estimates of forest canopy attributes at medium-large scales. UAV can combine the advantage of high resolution imagery with quick turnaround series, being therefore suitable for routine forest stand monitoring and real-time applications. © 2015 Elsevier B.V.

Key message: Foliage clumping can be estimated from logarithm averaging method in LAI-2000. The spatial scaling of clumping effects considered by the instrument is dependent on the sensor’s azimuthal view. Accurate estimates of foliage clumping index (Ω) are required to improve the retrieval of leaf area index (L) from optical instruments like LAI-2000/2200 Plant Canopy Analyzer (PCA) and digital hemispherical photography (DHP). The logarithm averaging method is often used to approximate L because clumping effects are considered at scales larger than the sensor’s field of view. However, the spatial scaling considered for logarithm averaging typically differs between PCA and DHP, resulting in different estimates of foliage clumping. Based on simulation, we demonstrated that applying restricting azimuth view caps (e.g., 45° or 10°) allows reliable estimation of Ω and more accurate estimation of L from PCA. Simulated Ω and L values were comparable to those measured using the PCA, DHP and litter traps. Linear averaging of the gap fractions across readings at a plot or site yields a concurrent estimate of effective leaf area index (L<inf>e</inf>), thus enabling the calculation of L<inf>e</inf>, L, and Ω from a single instrument fitted with view caps. Users need to be aware that the method they use for averaging gap fractions determines whether they are measuring L<inf>e</inf> or L, and PCA users need to be aware that they are applying increasingly large corrections for foliage clumping as they use more restrictive view caps, a fact that they can use to their advantage to improve estimates of L. © 2014, Springer-Verlag Berlin Heidelberg.