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LAIr: an R package to estimate LAI from Normalized Difference Vegetation Index
Bajocco , Sofia , Ferrara , Carlotta , Savian , Francesco , Ginaldi , Fabrizio , Puletti , Nicola , Crecco , Lorenzo , Bregaglio , Simone Ugo Maria , Chianucci , Francesco
remote sensing leaf area index field crop ndvi
Mostra abstract
Leaf area index (LAI) is an important biophysical parameter describing vegetation. LAI is typically retrieved from optical remote sensing by empirical models relating LAI to vegetation indices, such as the Normalized Difference Vegetation Index (NDVI). As the relationship between LAI and NDVI is non-linear and crop type dependant, several specific empirical equations relating LAI to NDVI have been developed using field data. This study presented LAIr, an R package to derive LAI from NDVI data from the most comprehensive library of conversion equations. In the package, the range of functions differs on environmental factors, sensors, and vegetation types, allowing flexibility in choosing appropriate options based on specific application, scale of investigation and data availability. We illustrated the use of the package with a case study to compare a generic LAI product with specific NDVI-based LAI estimations. By leveraging empirical knowledge, LAIr enables accurate and context-specific estimation of LAI. The deployment of an open-source R package serves as a valuable tool for aiding researchers in selecting the most appropriate equations for conducting NDVI-to-LAI conversion. © 2024
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2024
Rivista
SoftwareX
Dettagli
Vol. 27
DOI
Estimating canopy and stand structure in hybrid poplar plantations from multispectral UAV imagery
Romano , Elio , Brambilla , Massimo , Chianucci , Francesco , Tattoni , Clara , Puletti , Nicola , Chirici , Gherardo , Travaglini , Davide , Giannetti , Francesca
canopy photography canopy structure poplar plantation texture metrics digital camera gclm metrics unmanned aerial vehicle
Mostra abstract
Accurate estimates of canopy structure like canopy cover (CC), Leaf Area Index (LAI), crown volume (Vcr), as well as tree and stand structure like stem volume (V_st) and basal area (G), are considered essential measures to manage poplar plantations effectively as they are correlated with the growth rate and the detection of possible stress. This research exploits the possibility of developing a precision forestry application using an unmanned aerial vehicle (UAV), terrestrial digital camera and traditional field measurements to monitor poplar plantation variables. We set up the procedure using explanatory variables from the Grey Level Co-occurrence Matrix textural metrics (Entropy, Variance, Dissimilarity and Contrast) calculated based on UAV multispectral imagery. Our results show that the GCLM texture derived by multispectral ortomosaic provides adequate explanatory variables to predict poplar plantation characteristics related to plants' canopy and stand structure. The evaluation of the models targeting the different poplar plantation variables (i.e. Vcr, G_ha, Vst_ha, CC and LAI) with the four GLCM explanatory variables (i.e. Entropy, Variance, Dissimilarity and Contrast) consistently higher or equal resulted to R<sup>2</sup> ≥0.86. © 2024, Editura Silvica. All rights reserved.
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2024
Rivista
Annals of Forest Research
Dettagli
Vol. 67 (1) pp. 143 - 154
DOI
Multiple drivers of functional diversity in temperate forest understories: Climate, soil, and forest structure effects
Chelli , Stefano , Bricca , Alessandro , Tsakalos , James L. , Andreetta , Anna , Bonari , Gianmaria , Campetella , Giandiego , Carnicelli , Stefano , Cervellini , Marco , Puletti , Nicola , Wellstein , Camilla , Canullo , R.
climate change functional diversity bud bank forest management plant height seed mass specific leaf area
Mostra abstract
In macroecology, shifting from coarse- to local-scale explanatory factors is crucial for understanding how global change impacts functional diversity (FD). Plants possess diverse traits allowing them to differentially respond across a spectrum of environmental conditions. We aim to assess how macro- to microclimate, stand-scale measured soil properties, forest structure, and management type, influence forest understorey FD at the macroecological scale. Our study covers Italian forests, using thirteen predictors categorized into climate, soil, forest structure, and management. We analyzed five traits (i.e., specific leaf area, plant size, seed mass, belowground bud bank size, and clonal lateral spread) capturing independent functional dimensions to calculate the standardized effect size of functional diversity (SES-FD) for all traits (multi-trait) and for single traits. Multiple regression models were applied to assess the effect of predictors on SES-FD. We revealed that climate, soil, and forest structure significantly drive SES-FD of specific leaf area, plant size, seed mass, and bud bank. Forest management had a limited effect. However, differences emerged between herbaceous and woody growth forms of the understorey layer, with herbaceous species mainly responding to climate and soil features, while woody species were mainly affected by forest structure. Future warmer and more seasonal climate could reduce the diversity of resource economics, plant size, and persistence strategies of the forest understorey. Soil eutrophication and acidification may impact the diversity of regeneration strategies; canopy closure affects the diversity of above- and belowground traits, with a larger effect on woody species. Multifunctional approaches are vital to disentangle the effect of global changes on functional diversity since independent functional specialization axes are modulated by different drivers. © 2024 The Authors
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2024
Rivista
Science of the Total Environment
Dettagli
Vol. 916
DOI
One to rule them all? Assessing the performance of sustainable forest management indicators against multitaxonomic data for biodiversity conservation
Paillet , Yoan , Zapponi , Livia , Schall , Peter , Monnet , Jean Matthieu , Ammer , Christian , Balducci , Lorenzo , Boch , Steffen , Brazaitis , Gediminas , Campanaro , Alessandro , Chianucci , Francesco , Doerfler , Inken , Fischer , Markus , Gosselin , Marion , Goßner , Martin M. , Heilmann-Clausen , Jacob , Hofmeister , Jeňýk , Hošek , Jan , Jung , Kirsten G. , Kepfer-Rojas , Sebastian , Ódor , Péter , Tinya , Flóra , Trentanovi , Giovanni , Vacchiano , Giorgio , Vandekerkhove , Kris , Weisser , Wolfgang W. , Wohlwend , Michael Rudolf , Burrascano , Sabina
forest structure sustainable forest management multi-taxa diversity taxonomic indicators
Mostra abstract
Several regional initiatives and reporting efforts assess the state of forest biodiversity through broad-scale indicators based on data from national forest inventories. Although valuable, these indicators are essentially indirect and evaluate habitat quantity and quality rather than biodiversity per se. Therefore, their link to biodiversity may be weak, which decreases their usefulness for decision-making. For several decades, Forest Europe indicators assessed the state of European forests, in particular their biodiversity. However, no extensive study has been conducted to date to assess their performance – i.e. the capacity of the indicators to reflect variations in biodiversity – against multitaxonomic data. We hypothesized that no single biodiversity indicator from Forest Europe can represent overall forest biodiversity, but that several indicators would reflect habitat quality for at least some taxa in a comprehensive way. We tested the set of Forest Europe's indicators against the species richness of six taxonomic and functional groups across several hundreds of sampling units over Europe. We showed that, while some indicators perform relatively well across groups (e.g. deadwood volume), no single indicator represented all biodiversity at once, and that a combination of several indicators performed better. Forest Europe indicators were chosen for their availability and ease of understanding for most people. However, we showed that gaps in the monitoring framework persist, and that surveying certain taxa along with stand structure is necessary to support policymaking and tackle forest biodiversity loss at the large scale. Adding context (e.g. forest type) may also contribute to increase the performance of biodiversity indicators. © 2024 Elsevier Ltd
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2024
Rivista
Biological Conservation
Dettagli
Vol. 300
DOI
Silvicultural regime shapes understory functional structure in European forests
Chianucci , Francesco , Napoleone , Francesca , Ricotta , Carlo , Ferrara , Carlotta , Fusaro , Lina , Balducci , Lorenzo , Trentanovi , Giovanni , Bradley , Owen , Kovács , Bence , Mina , Marco , Cerabolini , Bruno Enrico Leone , Vandekerkhove , Kris , de Smedt , Pallieter , Lens , Luc , Hertzog , Lionel R. , Verheyen , Kris , Hofmeister , Jeňýk , Hošek , Jan , Matula , Radim , Doerfler , Inken , Müller , Jörg C. C. , Weisser , Wolfgang W. , Helback , Jan , Schall , Peter , Fischer , Markus , Heilmann-Clausen , Jacob , Riis-Hansen , Rasmus , Goldberg , Irina , Aude , Erik , Kepfer-Rojas , Sebastian , Kappel Schmidt , Inger , Riis-Nielsen , Torben , Mårell , Anders , Dumas , Yann , Janssen , Philippe , Paillet , Yoan , Archaux , Frédéric , Xystrakis , Fotios , Tinya , Flóra , Ódor , Péter , Aszalós , Réka , Bölöni , János , Cutini , Andrea , Bagella , Simonetta , Sitzia , Tommaso , Brazaitis , Gediminas , Marozas , Vitas , Ujházyová , Mariana , Ujházy , Karol , Máliš , František , Nordén , Björn , Burrascano , Sabina
functional diversity functional redundancy forest understory sustainable forest management unmanaged forests ecosystem resilience silvicultural regime
Mostra abstract
Managing forests to sustain their diversity and functioning is a major challenge in a changing world. Despite the key role of understory vegetation in driving forest biodiversity, regeneration and functioning, few studies address the functional dimensions of understory vegetation response to silvicultural management. We assessed the influence of the silvicultural regimes on the functional diversity and redundancy of European forest understory. We gathered vascular plant abundance data from more than 2000 plots in European forests, each associated with one out of the five most widespread silvicultural regimes. We used generalized linear mixed models to assess the effect of different silvicultural regimes on understory functional diversity (Rao's quadratic entropy) and functional redundancy, while accounting for climate and soil conditions, and explored the reciprocal relationship between three diversity components (functional diversity, redundancy and dominance) across silvicultural regimes through a ternary diversity diagram. Intensive silvicultural regimes are associated with a decrease in functional diversity and an increase in functional redundancy, compared with unmanaged conditions. This means that although intensive management may buffer communities' functions against species or functional losses, it also limits the range of understory response to environmental changes. Policy implications. Different silvicultural regimes influence different facets of understory functional features. While unmanaged forests can be used as a reference to design silvicultural practices in compliance with biodiversity conservation targets, different silvicultural options should be balanced at landscape scale to sustain the multiple forest functions that human societies are increasingly demanding. © 2024 The Author(s). Journal of Applied Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.
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2024
Rivista
Journal of Applied Ecology
Dettagli
Vol. 61 (10) pp. 2350 - 2364
DOI
The Relationship Between Maturation Size and Maximum Tree Size From Tropical to Boreal Climates
Journé , Valentin , Bogdziewicz , Michał , Courbaud , Benoít , Kunstler , Georges , Qiu , Tong , Aravena Acuña , Marie Claire , Ascoli , Davide , Bergeron , Yves , Berveiller , Daniel , Boivin , Thomas , Bonal , Raúl , Caignard , Thomas , Cailleret , Maxime , Calama , Rafael A. , Camarero , Jesús Julio , Chang-Yang , Chia Hao , Chave , Jérôme , Chianucci , Francesco , Curt , Thomas , Cutini , Andrea , Das , Adrian J. , Daskalakou , Evangelia N. , Davi , Hendrik , Delpierre , Nicolas , Delzon , Sylvain , Dietze , Michael C. , Calderon , Sergio Donoso , Dormont , Laurent , Espelta , Josep Maria , Farfan-Rios , William R. , Fenner , Michael , Franklin , Jerry F. , Gehring , Catherine A. , Gilbert , Gregory S. , Gratzer , Georg , Greenberg , Cathryn H. , Guignabert , Arthur , Guo , Qinfeng , Hacket-Pain , Andrew J. , Hampe , Arndt , Han , Qingmin , Hanley , Mick E. , Hille Ris Lambers , Janneke , Holik , Jan , Hoshizaki , K. , Ibáñez , Inés , Johnstone , Jill F. , Knops , Johannes Michael Hubertus , Kobe , Richard K. , Kurokawa , Hiroko , Lageard , Jonathan G.A. , LaMontagne , Jalene M. , Ledwoń , Mateusz , Lefèvre , François , Leininger , Theodor D. , Limousin , Jean Marc , Lutz , James A. , Macias , Diana S. , Mårell , Anders , McIntire , Eliot J.B. , Moran , Emily V. , Motta , Renzo , Myers , Jonathan A. , Nagel , Thomas A. , Naoe , Shoji , Noguchi , Mahoko , Norghauer , Julian M. , Oguro , Michio , Ourcival , Jean Marc , Parmenter , Robert R. , Pearse , Ian S. , Pérez-Ramos , Ignacio M. , Piechnik , Łukasz , Podgórski , Tomasz , Poulsen , John R. , Redmond , Miranda D. , Reid , Chantal D. , Šamonil , Pavel , Scher , C. Lane , Schlesinger , William H. , Seget , Barbara , Sharma , Shubhi , Shibata , Mitsue , Silman , Miles R. , Steele , Michael A. , Stephenson , Nathan L. , Straub , Jacob N. , Sutton , Samantha , Swenson , Jennifer J. , Swift , Margaret , Thomas , Peter A. , Uríarte , María , Vacchiano , Giorgio , Whipple , Amy Vaughn , Whitham , Thomas G. , Wright , Stuart Joseph , Zhu , Kai , Zimmerman , Jess K. , Żywiec , Magdalena , Clark , James S.
seed production allometry life history size tree fecundity tree maturation
Mostra abstract
The fundamental trade-off between current and future reproduction has long been considered to result in a tendency for species that can grow large to begin reproduction at a larger size. Due to the prolonged time required to reach maturity, estimates of tree maturation size remain very rare and we lack a global view on the generality and the shape of this trade-off. Using seed production from five continents, we estimate tree maturation sizes for 486 tree species spanning tropical to boreal climates. Results show that a species' maturation size increases with maximum size, but in a non-proportional way: the largest species begin reproduction at smaller sizes than would be expected if maturation were simply proportional to maximum size. Furthermore, the decrease in relative maturation size is steepest in cold climates. These findings on maturation size drivers are key to accurately represent forests' responses to disturbance and climate change. © 2024 John Wiley & Sons Ltd.
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2024
Rivista
Ecology Letters
Dettagli
Vol. 27 (9)
DOI
Evolutionary ecology of masting: mechanisms, models, and climate change
Bogdziewicz , Michał , Kelly , Dave J. , Ascoli , Davide , Caignard , Thomas , Chianucci , Francesco , Crone , Elizabeth E. , Fleurot , Emilie , Foest , Jessie J. , Gratzer , Georg , Hagiwara , Tomika , Han , Qingmin , Journé , Valentin , Keurinck , Léa , Kondrat , Katarzyna , McClory , Ryan W. , LaMontagne , Jalene M. , Mundo , Ignacio A. , Nussbaumer , Anita , Oberklammer , Iris , Ohno , Misuzu , Pearse , Ian S. , Pesendorfer , Mario B. , Resente , Giulia , Satake , Akiko , Shibata , Mitsue , Snell , Rebecca S. , Szymkowiak , Jakub , Touzot , Laura , Zwolak , Rafał , Żywiec , Magdalena , Hacket-Pain , Andrew J.
climate change economies of scale environmental prediction plant demography plant reproduction
Mostra abstract
Many perennial plants show mast seeding, characterized by synchronous and highly variable reproduction across years. We propose a general model of masting, integrating proximate factors (environmental variation, weather cues, and resource budgets) with ultimate drivers (predator satiation and pollination efficiency). This general model shows how the relationships between masting and weather shape the diverse responses of species to climate warming, ranging from no change to lower interannual variation or reproductive failure. The role of environmental prediction as a masting driver is being reassessed; future studies need to estimate prediction accuracy and the benefits acquired. Since reproduction is central to plant adaptation to climate change, understanding how masting adapts to shifting environmental conditions is now a central question. © 2024 The Authors
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2024
Rivista
Trends in Ecology and Evolution
Dettagli
Vol. 39 (9) pp. 851 - 862
DOI
Widespread breakdown in masting in European beech due to rising summer temperatures
Foest , Jessie J. , Bogdziewicz , Michał , Pesendorfer , Mario B. , Ascoli , Davide , Cutini , Andrea , Nussbaumer , Anita , Verstraeten , Arne , Beudert , Burkhard , Chianucci , Francesco , Mezzavilla , Francesco , Gratzer , Georg , Kunstler , Georges , Meesenburg , H. , Wagner , Markus , Mund , Martina , Cools , Nathalie , Vacek , Stanislav , Schmidt , Wolfgang , Vacek , Zdeněk Ck , Hacket-Pain , Andrew J.
climate change fagus sylvatica seed production fecundity masting reproduction
Mostra abstract
Climate change effects on tree reproduction are poorly understood, even though the resilience of populations relies on sufficient regeneration to balance increasing rates of mortality. Forest-forming tree species often mast, i.e. reproduce through synchronised year-to-year variation in seed production, which improves pollination and reduces seed predation. Recent observations in European beech show, however, that current climate change can dampen interannual variation and synchrony of seed production and that this masting breakdown drastically reduces the viability of seed crops. Importantly, it is unclear under which conditions masting breakdown occurs and how widespread breakdown is in this pan-European species. Here, we analysed 50 long-term datasets of population-level seed production, sampled across the distribution of European beech, and identified increasing summer temperatures as the general driver of masting breakdown. Specifically, increases in site-specific mean maximum temperatures during June and July were observed across most of the species range, while the interannual variability of population-level seed production (CVp) decreased. The declines in CVp were greatest, where temperatures increased most rapidly. Additionally, the occurrence of crop failures and low seed years has decreased during the last four decades, signalling altered starvation effects of masting on seed predators. Notably, CVp did not vary among sites according to site mean summer temperature. Instead, masting breakdown occurs in response to warming local temperatures (i.e. increasing relative temperatures), such that the risk is not restricted to populations growing in warm average conditions. As lowered CVp can reduce viable seed production despite the overall increase in seed count, our results warn that a covert mechanism is underway that may hinder the regeneration potential of European beech under climate change, with great potential to alter forest functioning and community dynamics. © 2024 The Authors. Global Change Biology published by John Wiley & Sons Ltd.
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2024
Rivista
Global Change Biology
Dettagli
Vol. 30 (5)
DOI