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Influence of voxel size and point cloud density on crown cover estimation in poplar plantations using terrestrial laser scanning
Puletti , Nicola , Grotti , Mirko , Ferrara , Carlotta , Chianucci , Francesco
canopy photography forest structure voxelization canopy gap fraction phase-shift laser scanner
Mostra abstract
Accurate estimates of crown cover (CC) are central for a wide range of forestry studies. As direct measurements do not exist to retrieve this variable in the field, CC is conventionally determined from optical measurements as the complement of gap fraction close to the zenith. As an alternative to passive optical measurements, active sensors like terrestrial Light Detection And Ranging (LiDAR) allows for characterizing the 3D canopy structure with unprecedented detail. We evaluated the reliability of terrestrial LiDAR (TLS) to estimate CC using a voxel-based approach. Specifically, we tested how different voxel sizes (ranging from 5-20 cm) and voxel densities (1-9 points/dm<sup>3</sup>) influenced the retrieval of CC. Results were compared against benchmark values obtained from digital cover photography (DCP). The trial was performed in hybrid poplar plantations in Northern Italy. Results indicate that TLS can be used for obtaining accurate estimates of CC, but the choice of voxel size and point density is critical for achieving such accuracy. In hybrid poplars, the best performance was obtained using voxel size of 10 cm and point density of 8 points/dm<sup>3</sup>. The combined ability of measuring and mapping CC also holds great potential to use TLS for calibrating and upscaling results using coarser-scale remotely sensed products. © 2021 Centro di Ricerca per la Selvicoltura, Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. All rights reserved.
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2021
Rivista
Annals of Silvicultural Research
Dettagli
Vol. 46 (2) pp. 148 - 154
DOI
A deep learning approach for automatic mapping of poplar plantations using Sentinel-2 imagery
D'Amico , Giovanni , Francini , Saverio , Giannetti , Francesca , Vangi , Elia , Travaglini , Davide , Chianucci , Francesco , Mattioli , Walter , Grotti , Mirko , Puletti , Nicola , Corona , P. , Chirici , Gherardo
deep learning big data forest tree crops fully connected neural networks multitemporal classification tree species mapping
Mostra abstract
Poplars are one of the most widespread fast-growing tree species used for forest plantations. Owing to their distinct features (fast growth and short rotation) and the dependency on the timber price market, poplar plantations are characterized by large inter-annual fluctuations in their extent and distribution. Therefore, monitoring poplar plantations requires a frequent update of information–not feasible by National Forest Inventories due to their periodicity–achievable by remote sensing systems applications. In particular, the new Sentinel-2 mission, with a revisiting period of 5 days, represents a potentially efficient tool for meeting this need. In this paper, we present a deep learning approach for mapping poplar plantations using Sentinel-2 time series. A reference dataset of poplar plantations was available for a large study area of more than 46,000 km<sup>2</sup> in Northern Italy and served as training and testing data. Two classification methods were compared: (1) a fully connected neural network (also called multilayer perceptron), and (2) a traditional logistic regression. The performance of the two approaches was estimated through bootstrapping procedure with a confidence interval of 99%. Results indicated for deep learning an omission error rate of 2.77%±2.76%, showing improvements compared to logistic regression, omission error rate = 8.91%±4.79%. © 2021 Informa UK Limited, trading as Taylor & Francis Group.
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2021
Rivista
GIScience and Remote Sensing
Dettagli
Vol. 58 (8) pp. 1352 - 1368
DOI
Influence of image pixel resolution on canopy cover estimation in poplar plantations from field, aerial and satellite optical imagery
Chianucci , Francesco , Puletti , Nicola , Grotti , Mirko , Bisaglia , Carlo , Giannetti , Francesca , Romano , Elio , Brambilla , Massimo , Mattioli , Walter , Cabassi , Giovanni , Bajocco , Sofia , Li , Linyuan , Chirici , Gherardo , Corona , P. , Tattoni , Clara
canopy photography crown cover foliage cover sentinel-2 unmanned aerial vehicles
Mostra abstract
Accurate estimates of canopy cover (CC) are central for a wide range of forestry studies. As direct measurements are impractical, indirect optical methods have often been used to estimate CC from the complement of gap fraction measurements obtained with restricted-view sensors. In this short note we evaluated the influence of the image pixel resolution (ground sampling distance; GSD) on CC estimation in poplar plantations obtained from field (cover photography; GSD < 1 cm), unmanned aerial (UAV; GSD <10 cm) and satellite (Sentinel-2; GSD = 10 m) imagery. The trial was conducted in poplar tree plantations in Northern Italy, with varying age and canopy cover. Results indicated that the coarser resolution available from satellite data is suitable to obtain estimates of canopy cover, as compared with field measurements obtained from cover photography; therefore, S2 is recommended for larger scale monitoring and routine assessment of canopy cover in poplar plantations. The higher resolution of UAV compared with Sentinel-2 allows finer assessment of canopy structure, which could also be used for calibrating metrics obtained from coarser-scale remote sensing products, avoiding the need of ground measurements. © 2021 Centro di Ricerca per la Selvicoltura, Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. All rights reserved.
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2021
Rivista
Annals of Silvicultural Research
Dettagli
Vol. 46 (1) pp. 8 - 13
DOI
Handbook of field sampling for multi-taxon biodiversity studies in European forests
Burrascano , Sabina , Trentanovi , Giovanni , Paillet , Yoan , Heilmann-Clausen , Jacob , Giordani , P. , Bagella , Simonetta , Bravo-Oviedo , Andrés , Campagnaro , Thomas , Campanaro , Alessandro , Chianucci , Francesco , de Smedt , Pallieter , Itziar , García Mijangos , Matošević , Dinka , Sitzia , Tommaso , Aszalós , Réka , Brazaitis , Gediminas , Cutini , Andrea , D'Andrea , Ettore , Doerfler , Inken , Hofmeister , Jeňýk , Hošek , Jan , Janssen , Philippe , Kepfer-Rojas , Sebastian , Korboulewsky , Nathalie , Kozák , Daniel , Lachat , Thibault , Lõhmus , Asko , López , Rosana , Mårell , Anders , Matula , Radim , Mikoláš , Martin , Munzi , Silvana , Nordén , Björn , Pärtel , Meelis , Penner , Johannes , Runnel , Kadri , Schall , Peter , Svoboda , Miroslav , Tinya , Flóra , Ujházyová , Mariana , Vandekerkhove , Kris , Verheyen , Kris , Xystrakis , Fotios , Ódor , Péter
biodiversity forest stand structure multi-taxon field methods indicators sampling protocol
Mostra abstract
Forests host most terrestrial biodiversity and their sustainable management is crucial to halt biodiversity loss. Although scientific evidence indicates that sustainable forest management (SFM) should be assessed by monitoring multi-taxon biodiversity, most current SFM criteria and indicators account only for trees or consider indirect biodiversity proxies. Several projects performed multi-taxon sampling to investigate the effects of forest management on biodiversity, but the large variability of their sampling approaches hampers the identification of general trends, and limits broad-scale inference for designing SFM. Here we address the need of common sampling protocols for forest structure and multi-taxon biodiversity to be used at broad spatial scales. We established a network of researchers involved in 41 projects on forest multi-taxon biodiversity across 13 European countries. The network data structure comprised the assessment of at least three taxa, and the measurement of forest stand structure in the same plots or stands. We mapped the sampling approaches to multi-taxon biodiversity, standing trees and deadwood, and used this overview to provide operational answers to two simple, yet crucial, questions: what to sample? How to sample? The most commonly sampled taxonomic groups are vascular plants (83% of datasets), beetles (80%), lichens (66%), birds (66%), fungi (61%), bryophytes (49%). They cover different forest structures and habitats, with a limited focus on soil, litter and forest canopy. Notwithstanding the common goal of assessing forest management effects on biodiversity, sampling approaches differed widely within and among taxonomic groups. Differences derive from sampling units (plots size, use of stand vs. plot scale), and from the focus on different substrates or functional groups of organisms. Sampling methods for standing trees and lying deadwood were relatively homogeneous and focused on volume calculations, but with a great variability in sampling units and diameter thresholds. We developed a handbook of sampling methods (SI 3) aimed at the greatest possible comparability across taxonomic groups and studies as a basis for European-wide biodiversity monitoring programs, robust understanding of biodiversity response to forest structure and management, and the identification of direct indicators of SFM. © 2021 The Authors
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2021
Rivista
Ecological Indicators
Dettagli
Vol. 132
DOI
Testing an expanded set of sustainable forest management indicators in Mediterranean coppice area
Cutini , Andrea , Ferretti , Marco , Bertini , Giada , Brunialti , Giorgio , Bagella , Simonetta , Chianucci , Francesco , Fabbio , Gianfranco , Fratini , Roberto , Riccioli , Francesco , Caddeo , C. , Calderisi , Marco , Ciucchi , B. , Corradini , Stefano , Cristofolini , Fabiana , Cristofori , Antonella , Di Salvatore , Umberto , Ferrara , Carlotta , Frati , Luisa , Landi , Sara , Marchino , Luca , Patteri , Giacomo , Piovosi , Maurizio , Roggero , Pier Paolo , Seddaiu , Giovanna , Gottardini , Elena
silviculture coppice conversion coppice natural evolution coppice system environmental monitoring sfm criteria
Mostra abstract
Although coppice forests represent a significant part of the European forest area, especially across southern Countries, they received little attention within the Sustainable Forest Management (SFM) processes and scenarios, whose guidelines have been mainly designed to high forests and national scale. In order to obtain “tailored” information on the degree of sustainability of coppices on the scale of the stand, we evaluated (i) whether the main coppice management options result in different responses of the SFM indicators, and (ii) the degree to which the considered SFM indicators were appropriate in their application at stand level. The study considered three different management options (Traditional Coppice TC, coppice under Natural Evolution NE, and coppice under Conversion to high forest by means of periodical thinning CO). In each of the 43 plots considered in the study, which covered three different European Forest Types, we applied a set of eighteen “consolidated” SFM indicators, covering all the six SFM Criteria (FOREST EUROPE, 2020) and, additionally, tested other sixteen novel indicators shaped for agamic forests and/or applicable at stand level. Results confirmed that several consolidated indicators related to resources status (Growing stock and Carbon stock), health (Defoliation and Forest damage), and socio-economic functions (Net revenue, Energy and Accessibility) were highly appropriate for evaluating the sustainability of coppice at stand level. In addition, some novel indicators related to resources status (Total above ground tree biomass), health (Stand growth) and protective functions (Overstorey cover and Understorey cover) proved to be highly appropriate and able to support the information obtained by the consolidated ones. As a consequence, a subset of consolidated SFM indicators, complemented with the most appropriate novel ones, may represent a valid option to support the evaluation of coppice sustainability at stand level. An integrated analysis of the SFM indicators showed that NE and CO display significant higher environmental performances as compared with TC. In addition, CO has positive effects also on socio-economic issues, while TC -which is an important cultural heritage and a silvicultural option that may help to keep local communities engaged in forestry – combines high wood harvesting rates with dense understory cover. Overall, each of the three management options showed specific sustainability values; as a consequence, their coexistence at a local scale and in accordance with the specific environmental conditions and the social-economic context, is greatly recommended since it may fulfill a wider array of sustainability issues. © 2021
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2021
Rivista
Ecological Indicators
Dettagli
Vol. 130
DOI
Continuous observations of forest canopy structure using low-cost digital camera traps
Chianucci , Francesco , Bajocco , Sofia , Ferrara , Carlotta
camera trapping digital cover photography trail camera phenological transition repeat photography
Mostra abstract
Assessing forest canopy dynamics is crucial for understanding the response of vegetation to environmental variability and change. While digital repeat photography is gaining increased attention for obtaining field phenology observations, colour indices derived from this method are often affected by leaf colour and actual canopy structure, complicating the physical interpretation of results. In addition, repeated photography requires power, storage capacity and remote data transfer, which are often limited in forest conditions. As an alternative, we tested a simple, cheap and fast solution to derive daily canopy structure observation from digital camera traps (CTs). Formerly deployed for wildlife monitoring, CTs are low-cost digital cameras designed for outdoor conditions and have low battery consumption, enable repeat acquisition, and often feature remote data transfer protocols. The trial was performed in a deciduous oak stand, where continuous images were acquired over a 1-year period using the time-lapse feature of the CT. Daily time series of canopy structure attributes were derived from the collected images using simple and automated procedures. Results were validated against reference manual cover photography measurements. The daily time series of foliage cover and leaf area index were then used to derive phenological transition dates, which were compared against phenological observations obtained from satellite Sentinel-2 data. Results indicated that field and satellite data provided comparable accuracy in determining the start of season (SOS). Larger discrepancies were found in determining the end of season (EOS), which can be attributed to the low number of good quality autumn images available from the satellite data. We concluded that CT is a robust method, which is ideally suited for routine, continuous field monitoring of canopy attributes and phenology. While this method can be used for evaluating remote sensing observations, the combination of CTs with satellite data holds great potential for greater spatiotemporal coverage, from field to landscape scales. © 2021
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2021
Rivista
Agricultural and Forest Meteorology
Dettagli
Vol. 307
DOI
Evaluating sampling schemes for quantifying seed production in beech (Fagus sylvatica) forests using ground quadrats
Chianucci , Francesco , Tattoni , Clara , Ferrara , Carlotta , Ciolli , Marco , Brogi , Rudy , Zanni , Michele , Apollonio , Marco , Cutini , Andrea
masting beechnuts litter traps mast seeding tree seed counts
Mostra abstract
Accurate estimates of seed production are central for understanding mast seeding mechanisms at tree and forest scales, and for designing sustainable management strategies. As trees are long-lived organisms, a long-term perspective is required to understand how reproduction acts during the life cycle of a tree. However, long-term series of seed production are challenging to obtain, as the available seed count procedures strictly rely on field methods, which are cost- and time-consuming, inherently limiting their widespread use at extensive spatial and temporal scales. In this study, we proposed a simple, rapid and flexible field method based on counting the seed in mobile ground quadrats (GQ), which was tested in beech forests. Quadrat measurements were first validated against reference measurements obtained from litter traps (LT) in three permanent plots. Results indicated that GQ provides robust and reliable estimates of seeds, which are not affected by seed predation occurring at the forest floor. Additional quadrat measurements were performed to evaluate the influence of sampling schemes (random, regular, systematic) on the estimation of mean seed production at the plot scale. One hundred quadrats were collected in 0.25 ha beech plots and considered as a reference for evaluating the different sampling schemes and sampling sizes. Measurements were performed in October (three plots), which represented the peak of seed fall, and November (two plots). Results indicate that about 25 randomly located measurements allowed to characterize plot-level mean seed production with an acceptable error below 20%, regardless of the different mean seed production observed between the studied plots and the sampling periods. If the 25 sampling points are arranged in a grid, the obtained mean estimates are within the confidence interval of the reference plot-level values. © 2021 Elsevier B.V.
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2021
Rivista
Forest Ecology and Management
Dettagli
Vol. 493
DOI
A comparison of ground-based count methods for quantifying seed production in temperate broadleaved tree species
Tattoni , Clara , Chianucci , Francesco , Ciolli , Marco , Ferrara , Carlotta , Marchino , Luca , Zanni , Michele , Zatelli , Paolo , Cutini , Andrea
masting mast seeding acorns litter trap nuts
Mostra abstract
• Key message: Litter trap is considered the most effective method to quantify seed production, but it is expensive and time-consuming. Counting fallen seeds using a quadrat placed on the ground yields comparable estimates to the litter traps. Ground quadrat estimates derived from either visual counting in the field or image counting from quadrat photographs are comparable, with the latter being also robust in terms of user sensitivity. • Context: Accurate estimates of forest seed production are central for a wide range of ecological studies. As reference methods such as litter traps (LT) are cost- and time-consuming, there is a need of fast, reliable, and low-cost tools to quantify this variable in the field. • Aims: To test two indirect methods, which consist of counting the seeds fallen in quadrats. • Methods: The trial was performed in three broadleaved (beech, chestnut, and Turkey oak) tree species. Seeds are either manually counted in quadrats placed at the ground (GQ) or from images acquired in the same quadrats (IQ) and then compared against LT measurements. • Results: GQ and IQ provide fast and reliable estimates of seeds in both oak and chestnut. In particular, IQ is robust in terms of user sensitivity and potentially enables automation in the process of seed monitoring. A null-mast year in beech hindered validation of quadrats in beech. • Conclusion: Quadrat counting is a powerful tool to estimate forest seed production. We recommend using quadrats and LT to cross-calibrate the two methods in case of estimating seed biomass. Quadrats could then be used more routinely on account of their faster and simpler procedure to obtain measurements at more spatially extensive scales. © 2021, The Author(s).
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2021
Rivista
Annals of Forest Science
Dettagli
Vol. 78 (1)
DOI
Characterizing the climatic niche of mast seeding in beech: Evidences of trade-offs between vegetation growth and seed production
Bajocco , Sofia , Ferrara , Carlotta , Bascietto , Marco , Alivernini , Alessandro , Chirichella , Roberta , Cutini , Andrea , Chianucci , Francesco
phenology ndvi masting enfa landsat spei
Mostra abstract
Masting is a complex mechanism which is mainly driven by a combination of internal plant resources and climatic conditions. While the driving role of climate in masting is being intensively studied, the interplay among climate, seed production, vegetation growth and phenology still needs further investigation. The objectives of this study were to identify the climatic determinants of different levels of seed production and of NDVI-based vegetation growth and phenology in European beech, and to evaluate if exists a trade-off between these two plant processes. To answer these questions, we used a 25-year-long dataset of beech seed production. We exploited the concept of ecological niche assuming that a mast year can be modeled like a species with variable preferences for different resources, which are the underlying annual climatic conditions; we performed an Ecological Niche Factor Analysis (ENFA), a presence-only modeling tool conventionally used in zoology and botany, and used seasonal (spring, summer, autumn) Standardized Precipitation-Evaporation Index (SPEI) observations, considering the current year (y−0), and up to one (y−1) and two (y−2) years before the masting event. For analyzing the role of vegetation growth and phenology, we used seasonal Normalized Difference Vegetation Index (NDVI) values and associated NDVI-based phenological metrics derived from Landsat imagery. Results indicated the driving role of climate for masting, especially in VHSP years. A moist summer and dry spring at y−2 and a dry summer at y−1 represented the main driving climatic conditions for masting; while a moist spring during the observation year represented the key condition for triggering higher intensities of seed production. Summer NDVI at y−0 and y−1 represented the variables discriminating best between masting and non-masting years and resulted as driven by opposite summer climatic conditions than seed production, thus indicating a trade-off between seed production and vegetation phenology. We concluded that reproduction and vegetation growth act as two different climate-dependent plant responses in beech, in a way that certain conditions through the years promote mast seeding and the opposite conditions favor vegetation growth. The understanding of climate-growth-masting relationships represents indispensable knowledge for providing a holistic view of masting mechanisms and developing adaptive forest management strategies in this species. © 2020
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2021
Rivista
Ecological Indicators
Dettagli
Vol. 121
DOI
IN SITU (TREE TALKER) AND REMOTELY-SENSED MULTISPECTRAL IMAGERY (SENTINEL-2) INTEGRATION FOR CONTINUOUS FOREST MONITORING: THE FIRST STEP TOWARD WALL-TO-WALL MAPPING OF TREE FUNCTIONAL TRAITS
Francini , Saverio , Zorzi , Ilaria , Giannetti , Francesca , Chianucci , Francesco , Travaglini , Davide , Chirici , Gherardo , Cocozza , C.
remote sensing deep learning modelling sensors tree talker tree-functional traits
Mostra abstract
Monitoring tree functional traits is essential for understanding forest ecosystems' capability to respond to climate change. Advancements in continuous proximal sensors and IoT technologies hold great potential for monitoring forest and tree ecosystem processes at the finest spatial and temporal scale. An example is the TreeTalker (TT) technology, which features sensors for measurements of the radial growth, sap flow, multispectral light transmission, air temperature, and humidity at tree level with an hourly frequency rate. Such information can be linked with remote sensing data acquired by the Sentinel-2 (S2) mission, allowing for scaling results over more spatially extensive areas. Firstly, we compared six TT with four S2 spectral bands with similar wavelengths. No correlation was found for blue, green and red channels (R<sup>2</sup> ranged between 0.04 and 0.09) while higher values were found for the near-infrared channel (R<sup>2</sup> = 0.9). To obtain an accurate prediction of TTs bands, also for those TTs bands which wavelengths are not similar to that of S2 bands, we implemented a Sentinel-2 to TreeTalker model (S2TT) by using an 8-layers fully connected deep neural network. The model was tested by using 23 Sentinel-2 imagery and data acquired by 40 TreeTalkers located in two different sites in Tuscany (a beech and a silver fir forest stand) in the period between 2020-07-15 and 2020-11-15. The R<sup>2</sup> ranged between 0.61 (B7, blue) and 0.96 (B6, near-infrared band). The S2TT model represents the first link between remote sensing and TreeTalkers, which might allow predicting tree functional traits using Sentinel-2 imagery. © 2021, Italian Society of Remote Sensing. All rights reserved.
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2021
Rivista
Trends in Earth Observation
Dettagli
Vol. 2 pp. 108 - 111
Dataset of tree inventory and canopy structure in poplar plantations in Northern Italy
Chianucci , Francesco , Marchino , Luca , Bidini , Claudio , Giorcelli , Achille , Coaloa , Domenico , Chiarabaglio , Pier Mario , Giannetti , Francesca , Chirici , Gherardo , Tattoni , Clara
leaf area index precision forestry crown volume hybrid i-214 poplar stem volume
Mostra abstract
The dataset reports data collected in 38 square (50 x 50m) 0.25 ha plots representative of poplar plantations in Lombardy Region (Northern Italy), which were used to calibrate optical information derived from unmanned aerial vehicle (UAV) and satellite (Sentinel-2) sensors. In each plot, the diameter at breast height was measured using a caliper; height, stem and crown volume of each tree were then derived from diameter using allometric equations developed in an independent study. Additional canopy attributes (foliage and crown cover, crown porosity, leaf area index) were derived in each plot from 12-20 optical images collected using digital cover photography (DCP). The collected data allows characterizing the assessment of structure of these plantations, along with their variation over the rotation time. Canopy and crown data also enable the evaluation of optimal rotation and tree spacing, as well as the relationship between stand and canopy structure. The raw datasets consist of 2,591 records (trees) associated with inventory measurements and 616 records (images) associated with optical canopy measurements. An R code was also provided to calculate plot-level attributes from raw data. Dataset and associated metadata are freely available at http://dx.doi.org/10.17632/ycr7w5pvkt.1. © 2021 Centro di Ricerca per la Selvicoltura, Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. All rights reserved.
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2021
Rivista
Annals of Silvicultural Research
Dettagli
Vol. 46 (1) pp. 93 - 96
DOI